View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_high_4 (Length: 412)
Name: NF18100_high_4
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 51301138 - 51301527
Alignment:
| Q |
1 |
ataaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301138 |
ataaaaatcagtgacataatacaaacaacttgcttatggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaa |
51301237 |
T |
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| Q |
101 |
aggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatatcttttgaagctgggatc |
200 |
Q |
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| T |
51301238 |
aggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatatcttttgaagctgggatc |
51301337 |
T |
|
| Q |
201 |
ataaatcctatcaacccctaaattcaagattgcaatatctaattgagcgtttgnnnnnnnnncaattaattgatctgattatgcaaaagataaagataat |
300 |
Q |
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| T |
51301338 |
ataaatcctatcaaccc----attcaacattgcaatatctaattgagcgtttgaaaaaaaaacaattaattgatctgattatgcaaaagataaagataa- |
51301432 |
T |
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| Q |
301 |
ttgcctgtgctgaacttttgacgagaccaatatttataaagtctgttgacttatttgctctattgtaactaaaatccatactaaacaaagagaga |
395 |
Q |
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| T |
51301433 |
ttgcctgtgctgaacttttgacgagaccaatatttataaagtctgttgacttatttgctctattgtaactaaaatccatactaaacaaagagaga |
51301527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 395
Target Start/End: Original strand, 50015113 - 50015500
Alignment:
| Q |
3 |
aaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaaag |
102 |
Q |
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|||| |||||| ||| ||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||| |||| |
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| T |
50015113 |
aaaattcagtggcatgatacaaacaacttacttatgggaaaatactacaatttttgcaatcatttctacacagtcaaaacacaacagatatatatcaaag |
50015212 |
T |
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| Q |
103 |
gacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatatcttttgaagctgggatcat |
202 |
Q |
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||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50015213 |
gacagtcctttgtgcacacatgcacaaggcaaatctgcatacgttctacattaatgccattgaggtataggtagtaaatatcttttgaagctgggatcat |
50015312 |
T |
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| Q |
203 |
aaatcctatcaacccctaaattcaagattgcaatatctaattgagcgtttgnnnnnnnnncaattaattgatctgattatgcaaaagataaagataattt |
302 |
Q |
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| T |
50015313 |
aaatcctgtcaactactaaattcaacattgcaatatccaattgaacgtttg---aaaaaacaattaattgatctgattatgcaaaagataaatctaa-tt |
50015408 |
T |
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| Q |
303 |
gcctgtgctgaacttttgacgagaccaatatttataaagtctgttgacttatttgctctattgtaactaaaatccatactaaacaaagagaga |
395 |
Q |
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| T |
50015409 |
gcctg-gatgaacttctgacgacaccaatatttttaaagtctgtcaacttatttgctctattgtaactaaaatccatactaaacaaagagaga |
50015500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 18853752 - 18854150
Alignment:
| Q |
3 |
aaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaaag |
102 |
Q |
| |
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|||||||||| || |||||||||||||| |||| || ||||||||||||| |||||||||| ||||||| |||||||||| | ||||||||||||||| |
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| T |
18853752 |
aaaaatcagttgcacaatacaaacaacttacttatgggaaaatactacaatttttgcaatcagttctacatagtcaaaacacaacagataaatataaaaa |
18853851 |
T |
|
| Q |
103 |
gacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtag------gtagtaaatatcttttgaagctgg |
196 |
Q |
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| T |
18853852 |
gacgatcctttctgtgcatacgcacaaggtaaatctgcacacattctacattaatgccattgaggtatagataatattagtaaatatcttttgaaggtgg |
18853951 |
T |
|
| Q |
197 |
gatcataaatcctatcaa--cccctaaattcaagattgcaatatctaattgagcgtttgnnnnnnnnncaattaattgatctgattatgcaaaagataaa |
294 |
Q |
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|||||||||||||||||| | ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||| |
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| T |
18853952 |
gatcataaatcctatcaattactataaattcaatgttgcaatatctaatttagtgtttg---gaaaaacaattaattgatctgattaagcaaaagataaa |
18854048 |
T |
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| Q |
295 |
gataatttgcctgtgctgaacttttgacgagaccaatatttataaagtctgttgacttatttgctctattgtaactaaaatccatactaaacaaagagag |
394 |
Q |
| |
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||| ||| ||| ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||| |||||| ||||| |||||||| |||||| |
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| T |
18854049 |
tctaa-ttgtctg-gctgaacttctgacgagaccaatatttttaaagttcgatgacttatttgctctattttaactacaatccgtactaaaccaagagaa |
18854146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 44112170 - 44112561
Alignment:
| Q |
3 |
aaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaaag |
102 |
Q |
| |
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|||| |||||| ||| ||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||| |||| |
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| T |
44112170 |
aaaattcagtggcatgatacaaacaacttacttatgaaaaaatactacaatttttgcaatcatttctacacagtcaaaacacaacagatatatatcaaag |
44112269 |
T |
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| Q |
103 |
gacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatatcttttgaagctgggatcat |
202 |
Q |
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|||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44112270 |
gacggtcctttgtgcgcacatgcacaaggcaaatctgcatacgttctacattaatgccattgaggtataggtagtaaatatcttttgaagctgggatcat |
44112369 |
T |
|
| Q |
203 |
aaatcctatcaacccctaaattcaagattgcaatatctaattgagcgtttgnnnnnnnnncaattaattgatctgattatgcaaaagataaagataattt |
302 |
Q |
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||||||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
44112370 |
aaatcctgtcaactactaaattcaacattgcaatatccaattgaccgtttg---aaaaaacaattaattgatctgattatgcaaaagataaatctaa-tt |
44112465 |
T |
|
| Q |
303 |
gcctgtgctgaacttttgacgagaccaatatttataaagtctgttgacttatttgctctattgtaactaaaatccatactaaacaaagagagagaaa |
399 |
Q |
| |
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||||| ||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44112466 |
gcctg-catgaacttctgacgagaccaatacttttaaagtctgtcaacttatttgctctattgtaactaaaatccatactaaacaaagagaaagaaa |
44112561 |
T |
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