View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_high_6 (Length: 299)
Name: NF18100_high_6
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 41822868 - 41823128
Alignment:
| Q |
19 |
agaaagcaattcatgggattatgtatttagttgaaaataaataaggtttttgacctaacctaaaccatacaaaagaaaattgaatgggtttcttttgtca |
118 |
Q |
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| T |
41822868 |
agaaagcaattcatgggattatgtatttagttgaaaataaataaggtttttgacctaacctaaaccatacaaaagaaaattgaatgggtatcttttgtca |
41822967 |
T |
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| Q |
119 |
tataaaatcatactctctttt--ttaaacaataaaatcatattctctaaatatcgtgttaaatcttaaaatattgtttaatctcatttatttattaatta |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822968 |
tataaaatcatactctcttttttttaaacaataaaatcatactctctaaatatcgtgttaaatcttaaaatattgtttaatctcatttatttattaatta |
41823067 |
T |
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| Q |
217 |
gctcgttagtattttaaaatatatttccgattaccttatttgactatgttaatatgaactt |
277 |
Q |
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| T |
41823068 |
gctcgttagtattttaaaatatatttccgattactttatttgactatgttaatatgaactt |
41823128 |
T |
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