View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_high_8 (Length: 250)
Name: NF18100_high_8
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 42681815 - 42681654
Alignment:
| Q |
1 |
ccaaactcaaagtcactaaagtgttatccttaaatcagttgcctaaaacaacccctcccatattcctcattacttcctattcttaacttttggtcattta |
100 |
Q |
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| T |
42681815 |
ccaaactcaaaatcactaaagtgttatccttgaatcagttgcctaaaacaacccctcccatattcctcattactccctattcttaacttttggtcattta |
42681716 |
T |
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| Q |
101 |
aattattattttttgttaaacactcttagtt-ttttaagaaattaagattacgttgaagtat |
161 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42681715 |
aattattattttttgttaaacactcttagtttttttaagaaattaagattacgttgaagtat |
42681654 |
T |
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