View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18100_high_9 (Length: 249)

Name: NF18100_high_9
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18100_high_9
NF18100_high_9
[»] chr3 (5 HSPs)
chr3 (29-200)||(14825157-14825328)
chr3 (66-154)||(12072367-12072454)
chr3 (97-156)||(3190097-3190156)
chr3 (97-156)||(3207020-3207079)
chr3 (30-93)||(3190187-3190251)
[»] chr5 (1 HSPs)
chr5 (29-199)||(26887573-26887744)
[»] chr6 (1 HSPs)
chr6 (105-151)||(22252757-22252803)
[»] chr4 (1 HSPs)
chr4 (108-156)||(147800-147848)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 14825157 - 14825328
Alignment:
Q  29 cacaacaatacatcaacgacacaaatcttcatcacacatttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatc 128  Q
    |||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14825157 cacaacaacacatcaacaacacaaatcttcatcacacattttccggatctagacagacaatttatgtatagtgaatgaattttttagtaattattgaatc 14825256  T
Q  129 aaagacaaacacaacaacaattacaagtcctnnnnnnnnctagtttatcgataatggaggagggaaaaattt 200  Q
    ||||||||||||||||||||||||| || ||        |||||||||||||||||||||||||||||||||    
T  14825257 aaagacaaacacaacaacaattacaggttctaaaaaaaactagtttatcgataatggaggagggaaaaattt 14825328  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 12072454 - 12072367
Alignment:
Q  66 atttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaa 154  Q
    ||||||| |||||||||||||| ||||||||||||||||  |||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  12072454 atttttcggatctagacagacagtttatgtatagtgaatttattttt-agtaataattgaaccaaacacaaacacaacaacaattacaa 12072367  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 3190156 - 3190097
Alignment:
Q  97 tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagt 156  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3190156 tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagt 3190097  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 3207079 - 3207020
Alignment:
Q  97 tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagt 156  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3207079 tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagt 3207020  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 3190251 - 3190187
Alignment:
Q  30 acaacaatacatcaacgacacaaatcttcatc-acacatttttcagatctagacagacaatttat 93  Q
    ||||||| |||||||| ||||||||||||||| |||||||||   |||||||||| | |||||||    
T  3190251 acaacaacacatcaacaacacaaatcttcatcaacacattttctggatctagacatagaatttat 3190187  T

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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 26887573 - 26887744
Alignment:
Q  29 cacaacaatacatcaacgacacaaatcttcatca-cacatttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaat 127  Q
    |||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  26887573 cacaacaacacatcaacaacacaaatcttcatcaacacatttttcggatctagacagacaatttatgtatagtgaataaattttttaataataattgaat 26887672  T
Q  128 caaagacaaacacaacaacaattacaagtcctnnnnnnnnctagtttatcgataatggaggagggaaaaatt 199  Q
    || |||||||||||||||||||||||||| ||        | ||||||| ||| ||||||||||||||||||    
T  26887673 cagagacaaacacaacaacaattacaagttctaaaaaacaccagtttattgattatggaggagggaaaaatt 26887744  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 22252803 - 22252757
Alignment:
Q  105 gaattttttagtaataattgaatcaaagacaaacacaacaacaatta 151  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22252803 gaattttctagtaataattgaatcagagacaaacacaacaacaatta 22252757  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 147848 - 147800
Alignment:
Q  108 ttttttagtaataattgaatcaaagacaaacacaacaacaattacaagt 156  Q
    |||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  147848 ttttttagcaataattgaatcagagataaacacaacaacaattacaagt 147800  T

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