View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18100_low_10 (Length: 249)
Name: NF18100_low_10
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 14825157 - 14825328
Alignment:
| Q |
29 |
cacaacaatacatcaacgacacaaatcttcatcacacatttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatc |
128 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14825157 |
cacaacaacacatcaacaacacaaatcttcatcacacattttccggatctagacagacaatttatgtatagtgaatgaattttttagtaattattgaatc |
14825256 |
T |
|
| Q |
129 |
aaagacaaacacaacaacaattacaagtcctnnnnnnnnctagtttatcgataatggaggagggaaaaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
14825257 |
aaagacaaacacaacaacaattacaggttctaaaaaaaactagtttatcgataatggaggagggaaaaattt |
14825328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 12072454 - 12072367
Alignment:
| Q |
66 |
atttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaa |
154 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12072454 |
atttttcggatctagacagacagtttatgtatagtgaatttattttt-agtaataattgaaccaaacacaaacacaacaacaattacaa |
12072367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 3190156 - 3190097
Alignment:
| Q |
97 |
tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagt |
156 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
3190156 |
tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagt |
3190097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 3207079 - 3207020
Alignment:
| Q |
97 |
tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagt |
156 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
3207079 |
tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagt |
3207020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 3190251 - 3190187
Alignment:
| Q |
30 |
acaacaatacatcaacgacacaaatcttcatc-acacatttttcagatctagacagacaatttat |
93 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||| |||||||||| | ||||||| |
|
|
| T |
3190251 |
acaacaacacatcaacaacacaaatcttcatcaacacattttctggatctagacatagaatttat |
3190187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 26887573 - 26887744
Alignment:
| Q |
29 |
cacaacaatacatcaacgacacaaatcttcatca-cacatttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaat |
127 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
26887573 |
cacaacaacacatcaacaacacaaatcttcatcaacacatttttcggatctagacagacaatttatgtatagtgaataaattttttaataataattgaat |
26887672 |
T |
|
| Q |
128 |
caaagacaaacacaacaacaattacaagtcctnnnnnnnnctagtttatcgataatggaggagggaaaaatt |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||| || | ||||||| ||| |||||||||||||||||| |
|
|
| T |
26887673 |
cagagacaaacacaacaacaattacaagttctaaaaaacaccagtttattgattatggaggagggaaaaatt |
26887744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 22252803 - 22252757
Alignment:
| Q |
105 |
gaattttttagtaataattgaatcaaagacaaacacaacaacaatta |
151 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22252803 |
gaattttctagtaataattgaatcagagacaaacacaacaacaatta |
22252757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 147848 - 147800
Alignment:
| Q |
108 |
ttttttagtaataattgaatcaaagacaaacacaacaacaattacaagt |
156 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
147848 |
ttttttagcaataattgaatcagagataaacacaacaacaattacaagt |
147800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University