View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_low_11 (Length: 246)
Name: NF18100_low_11
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 46213221 - 46213438
Alignment:
| Q |
18 |
tattcttccttcattctcctctctctct----atatatcattttctcttttaaattccttcagtattcagctatacatcnnnnnnnccattgttatagct |
113 |
Q |
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| T |
46213221 |
tattcttccttcattctcctctctctctctctatatatcattttctcttttaaattccttcagtattcagctatacatctttttttc-attgttatagct |
46213319 |
T |
|
| Q |
114 |
agctaagaattctatgccacccattttgtnnnnnnnnnnnnnnnnnnnnnnnnnatttgggtcttttgttcattcttaagtcctaattaatcatgtcaac |
213 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46213320 |
a----agaattctatgccacccattttgtaatatattataatatagaatatataatttgggtcttttgttcattcttaaggcctaattaatcatgtcaac |
46213415 |
T |
|
| Q |
214 |
cgatcaagtttcaccattctctg |
236 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
46213416 |
cgatcaagtttcaccattctctg |
46213438 |
T |
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