View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18100_low_13 (Length: 237)

Name: NF18100_low_13
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18100_low_13
NF18100_low_13
[»] chr3 (3 HSPs)
chr3 (5-219)||(42681846-42682062)
chr3 (25-73)||(52404706-52404754)
chr3 (1-47)||(34305826-34305872)
[»] chr6 (3 HSPs)
chr6 (1-116)||(6793462-6793579)
chr6 (1-73)||(24226071-24226143)
chr6 (1-47)||(512782-512828)
[»] chr1 (3 HSPs)
chr1 (2-101)||(49315741-49315842)
chr1 (27-98)||(7537015-7537088)
chr1 (1-62)||(4213846-4213907)
[»] chr2 (3 HSPs)
chr2 (8-89)||(21835981-21836064)
chr2 (1-89)||(28640146-28640236)
chr2 (1-107)||(13772790-13772898)
[»] chr4 (5 HSPs)
chr4 (1-92)||(36498605-36498698)
chr4 (1-76)||(50041820-50041895)
chr4 (1-76)||(50049042-50049117)
chr4 (1-61)||(31203345-31203405)
chr4 (25-73)||(34251239-34251287)
[»] chr5 (3 HSPs)
chr5 (3-92)||(3622335-3622426)
chr5 (9-92)||(3622216-3622301)
chr5 (2-47)||(17250474-17250519)
[»] chr8 (4 HSPs)
chr8 (27-79)||(42127215-42127267)
chr8 (1-76)||(44132879-44132954)
chr8 (15-47)||(15135965-15135997)
chr8 (1-53)||(20224910-20224962)
[»] chr7 (1 HSPs)
chr7 (1-53)||(44309422-44309474)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 42681846 - 42682062
Alignment:
Q  5 gaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagagatagagacagagtcaccgaactcaaaatctcc 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42681846 gaaagagaatgatagatgagtaattaaaataaattattttgatagaagataattattggctaggagagatagagacatagtcaccgaactcaaaatctcc 42681945  T
Q  105 gaaatgctacccctttattcagatggattcaatgttgcttttcatcaaagaaaatggaatgttgttgaccttt--tctttgtcaaaatgttagaaataca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  42681946 gaaatgctacccctttattcagatggattcaatgttgcttttcatcaaagaaaatggaatgttgttgaccttttctctttgtcaaaatgttagaaatacc 42682045  T
Q  203 agaccctccgtaggttc 219  Q
    |||||||||||||||||    
T  42682046 agaccctccgtaggttc 42682062  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 52404754 - 52404706
Alignment:
Q  25 taattaaaataaattattttgataaaaaataattattggctaggagaga 73  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  52404754 taattaaaataaattattttgatgaaaaataattattgattaggagaga 52404706  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34305872 - 34305826
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgat 47  Q
    |||||| |||||| ||||||||||| ||||||||| |||||||||||    
T  34305872 agatgagagagaatgatagatgagtgattaaaatatattattttgat 34305826  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 6793579 - 6793462
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctagg--agagatagagacagagtcaccgaactcaaa 98  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||| | | ||||||||||| ||||  ||||||||||||| | ||||| ||| ||||    
T  6793579 agatgagagagaacgatagatgagtgattaaaataaattattttgatgagagataattattggttaggatagagatagagacaaaatcaccaaacacaaa 6793480  T
Q  99 atctccgaaatgctaccc 116  Q
     ||  |||||||||||||    
T  6793479 gtcatcgaaatgctaccc 6793462  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24226143 - 24226071
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagaga 73  Q
    |||||| ||| || ||||||||| | ||||||||||||||||||||| | | | ||||||||| |||||||||    
T  24226143 agatgagagaaaatgatagatgaatgattaaaataaattattttgatgacagagaattattggttaggagaga 24226071  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 512828 - 512782
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgat 47  Q
    |||||| ||||||  |||||||||| |||||||||||||||||||||    
T  512828 agatgagagagaataatagatgagtgattaaaataaattattttgat 512782  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 49315741 - 49315842
Alignment:
Q  2 gatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggcta--ggagagatagagacagagtcaccgaactcaaaa 99  Q
    ||||| |||||| | ||||||||| ||||||||||||||||||||| ||| ||||||||||  ||   |||||||||||||| |||||||||||||||||    
T  49315741 gatgagagagaatggtagatgagtgattaaaataaattattttgatgaaatataattattgattatgagagagatagagacaaagtcaccgaactcaaaa 49315840  T
Q  100 tc 101  Q
    ||    
T  49315841 tc 49315842  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 7537015 - 7537088
Alignment:
Q  27 attaaaataaattattttgataaaaaataattattggctag--gagagatagagacagagtcaccgaactcaaa 98  Q
    ||||||||||||||||||||||||| | | | ||||| |||  |||||||||||||| ||||||| ||||||||    
T  7537015 attaaaataaattattttgataaaagagagtgattggttaggagagagatagagacaaagtcaccaaactcaaa 7537088  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4213846 - 4213907
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattg 62  Q
    |||||| |||||| |||| |||||| |||||||||||||||||||| || | ||||||||||    
T  4213846 agatgagagagaacgatatatgagtgattaaaataaattattttgagaagagataattattg 4213907  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 21836064 - 21835981
Alignment:
Q  8 agagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctagg--agagatagagacagagtcacc 89  Q
    |||||| ||||||||||| ||||||||||||||||||||| |  || ||||||||| ||||  ||||||||||||| |||||||    
T  21836064 agagaatgatagatgagtgattaaaataaattattttgatgaggaaaaattattggttaggaaagagatagagacaaagtcacc 21835981  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28640146 - 28640236
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggag--agatagagacagagtcacc 89  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||| | | |||||   ||||||  ||||||||||| |||||||    
T  28640146 agatgaaagagaatgatagatgaatgattaaaataaattattttgataaaagagagttatttattaggagaaagatagagacaaagtcacc 28640236  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13772790 - 13772898
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagaga--tagagacagagtcaccgaactcaaa 98  Q
    |||||||| ||||  |||||||||| |||||| ||||| |||||||| | | | ||||||| | |||||||||  || |||||  |||||||||||||||    
T  13772790 agatgaaaaagaataatagatgagtgattaaattaaatcattttgatgagagaaaattattcgttaggagagagatatagacaatgtcaccgaactcaaa 13772889  T
Q  99 atctccgaa 107  Q
    ||| |||||    
T  13772890 atcaccgaa 13772898  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 36498605 - 36498698
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctag--gagagatagagacagagtcaccgaa 92  Q
    |||||| |||| | ||||||||||| |||||||||||||||||||||   | | ||||||||| |||  |||||||||||||| ||||||||||    
T  36498605 agatgagagaggatgatagatgagtgattaaaataaattattttgatgtgagagaattattggttagaagagagatagagacaaagtcaccgaa 36498698  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50041820 - 50041895
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagagatag 76  Q
    |||||| ||| || ||||||||| | ||||||||||||||||||||| | | | ||||||||| || |||||||||    
T  50041820 agatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagagatag 50041895  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50049042 - 50049117
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagagatag 76  Q
    |||||| ||| || ||||||||| | ||||||||||||||||||||| | | | ||||||||| || |||||||||    
T  50049042 agatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagagatag 50049117  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31203405 - 31203345
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattatt 61  Q
    ||||||||||||  |||| ||||  |||||||||||||||||| ||| ||||| |||||||    
T  31203405 agatgaaagagagtgataaatgatcaattaaaataaattatttcgatgaaaaaaaattatt 31203345  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 34251287 - 34251239
Alignment:
Q  25 taattaaaataaattattttgataaaaaataattattggctaggagaga 73  Q
    ||||||||||||||||||| ||||||| ||||| ||||| || ||||||    
T  34251287 taattaaaataaattatttagataaaatataatgattggttaagagaga 34251239  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 3622335 - 3622426
Alignment:
Q  3 atgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctag--gagagatagagacagagtcaccgaa 92  Q
    |||| |||||| |||| | |||||||||||||||||||||||||| | |||||| |||| | |||  |||||||||||| | ||||||||||    
T  3622335 atgagagagaatgatatacgagtaattaaaataaattattttgatgagaaataactatttgttagaagagagatagagataaagtcaccgaa 3622426  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 3622216 - 3622301
Alignment:
Q  9 gagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctag--gagagatagagacagagtcaccgaa 92  Q
    ||||| |||| | |||| ||||||||||||||||||||| | | | ||||||||| |||  |||||||||||||| ||||||||||    
T  3622216 gagaatgatatacgagtgattaaaataaattattttgatgagagaaaattattggttagaagagagatagagacaaagtcaccgaa 3622301  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 17250474 - 17250519
Alignment:
Q  2 gatgaaagagaaagatagatgagtaattaaaataaattattttgat 47  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||    
T  17250474 gatgaaagagaatgatagatgaatgattaaagtaaattattttgat 17250519  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 42127215 - 42127267
Alignment:
Q  27 attaaaataaattattttgataaaaaataattattggctaggagagatagaga 79  Q
    ||||||||||||||||||||| | ||||||||||||| |||||| || |||||    
T  42127215 attaaaataaattattttgatgagaaataattattggttaggagggagagaga 42127267  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44132879 - 44132954
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaataattattggctaggagagatag 76  Q
    |||||| ||| || ||||||||| | ||||||||||||||||||||| | | | ||||||||| || |||||||||    
T  44132879 agatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagagatag 44132954  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 15135997 - 15135965
Alignment:
Q  15 gatagatgagtaattaaaataaattattttgat 47  Q
    ||||||||||| |||||||||||||||||||||    
T  15135997 gatagatgagtgattaaaataaattattttgat 15135965  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20224910 - 20224962
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaa 53  Q
    |||| ||||| || ||||||| | |||||||||||||||||||| ||||||||    
T  20224910 agattaaagaaaatgatagataaataattaaaataaattattttaataaaaaa 20224962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44309422 - 44309474
Alignment:
Q  1 agatgaaagagaaagatagatgagtaattaaaataaattattttgataaaaaa 53  Q
    |||| ||||| || ||||||| | |||||||||||||||||||| ||||||||    
T  44309422 agattaaagaaaatgatagataaataattaaaataaattattttaataaaaaa 44309474  T

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