View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_low_14 (Length: 216)
Name: NF18100_low_14
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 30316014 - 30315860
Alignment:
| Q |
41 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
140 |
Q |
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| T |
30316014 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttatt |
30315915 |
T |
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| Q |
141 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatca |
195 |
Q |
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| T |
30315914 |
ctttgctcactatgagctatagttccttacagcatacatgcataacatttgatca |
30315860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 30305147 - 30304994
Alignment:
| Q |
41 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
140 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
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| Q |
141 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatca |
195 |
Q |
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| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatca |
30304994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 30287462 - 30287326
Alignment:
| Q |
52 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
151 |
Q |
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| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
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| Q |
152 |
atgagctatagttccttacagcatacatgcataatatttgatca |
195 |
Q |
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| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatca |
30287326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 30300349 - 30300202
Alignment:
| Q |
41 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
140 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||| |
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| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttatt |
30300257 |
T |
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| Q |
141 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatca |
195 |
Q |
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| T |
30300256 |
ctctgctcactatgagctatgactccttacagcatacaagcataatatttgatca |
30300202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 30292485 - 30292380
Alignment:
| Q |
52 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
151 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
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| Q |
152 |
atgagct |
158 |
Q |
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||||||| |
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| T |
30292386 |
atgagct |
30292380 |
T |
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