View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18100_low_2 (Length: 495)

Name: NF18100_low_2
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18100_low_2
NF18100_low_2
[»] chr6 (2 HSPs)
chr6 (1-62)||(3969624-3969685)
chr6 (1-62)||(24124814-24124874)
[»] chr5 (1 HSPs)
chr5 (1-62)||(9805405-9805466)
[»] chr3 (1 HSPs)
chr3 (1-62)||(36620670-36620731)
[»] chr1 (1 HSPs)
chr1 (1-62)||(23354578-23354639)
[»] chr4 (1 HSPs)
chr4 (15-62)||(36121529-36121576)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3969685 - 3969624
Alignment:
Q  1 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3969685 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 3969624  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24124814 - 24124874
Alignment:
Q  1 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24124814 ttgatcatattatccatgactat-gattgatctagaataacttgatccggacaagatactca 24124874  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9805466 - 9805405
Alignment:
Q  1 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805466 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 9805405  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36620670 - 36620731
Alignment:
Q  1 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36620670 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 36620731  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23354578 - 23354639
Alignment:
Q  1 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23354578 ttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca 23354639  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 36121529 - 36121576
Alignment:
Q  15 catgactattgattgatctagaataacttgatccggacaagatactca 62  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  36121529 catgactatgaattgatctagaataacttgatccggacaagatactca 36121576  T

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