View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_low_3 (Length: 427)
Name: NF18100_low_3
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 69 - 413
Target Start/End: Original strand, 8698266 - 8698610
Alignment:
| Q |
69 |
cgttgttgtcgattaggcttgcaaggaatgaagttggagctgaattgtacctcatcaatagtccagaattttgttgtagataatgttgttttgaatgaat |
168 |
Q |
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| T |
8698266 |
cgttgttgtcgattaggtttgtaaacaacgaggttggagccgagttatacctcattagtagtccagaattttgttgttgataatgttgttttgaatgaat |
8698365 |
T |
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| Q |
169 |
aatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatcttgcttatacaattatctgcatnnnnnnntatctttataatt |
268 |
Q |
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| T |
8698366 |
aatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatcttgcttatacaattatctgcataaaaaaatatctttataatt |
8698465 |
T |
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| Q |
269 |
tcttcctataaactaagcaactttttgacttggaacataaaccggatgctgcgactgcaatttaaaaccttttgtgtgataacctcaaacagttaaactc |
368 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698466 |
tcttcctataaactaagcaactttttgacttgcaacataaaccgaatgctgcgactgcaatttaaaaccttttgtgtgataacctcaaacagttaaactc |
8698565 |
T |
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| Q |
369 |
atggttttatattgtggtctgcaactataattgtagctaaaatat |
413 |
Q |
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| T |
8698566 |
atggttttatattgcggtctgcaactgtaattgtggctgaaatat |
8698610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 69 - 413
Target Start/End: Original strand, 9050153 - 9050497
Alignment:
| Q |
69 |
cgttgttgtcgattaggcttgcaaggaatgaagttggagctgaattgtacctcatcaatagtccagaattttgttgtagataatgttgttttgaatgaat |
168 |
Q |
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||||||||||||||||| ||| || || || |||||||| || || |||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9050153 |
cgttgttgtcgattaggtttgtaaacaacgaggttggagccgagttatacctcattagtagtccagaattttgttgttgataatgttgttttgaatgaat |
9050252 |
T |
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| Q |
169 |
aatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatcttgcttatacaattatctgcatnnnnnnntatctttataatt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9050253 |
aatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatcttgcttatacaattatctgcataaaaaaatatctttataatt |
9050352 |
T |
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| Q |
269 |
tcttcctataaactaagcaactttttgacttggaacataaaccggatgctgcgactgcaatttaaaaccttttgtgtgataacctcaaacagttaaactc |
368 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9050353 |
tcttcctataaactaagcaactttttgacttgcaacataaaccgaatgctgcgactgcaatttaaaaccttttgtgtgataacctcaaacagttaaactc |
9050452 |
T |
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| Q |
369 |
atggttttatattgtggtctgcaactataattgtagctaaaatat |
413 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||| |||||| |
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| T |
9050453 |
atggttttatattgcggtctgcaactgtaattgtggctgaaatat |
9050497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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