View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_low_5 (Length: 390)
Name: NF18100_low_5
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 17663189 - 17663549
Alignment:
| Q |
12 |
atgaaatgtagcaagtagtctcttgatgttgtcctcttgtatgctgatagtagtgtctctggatttaggttttagcagcgtctttaatgccttggaaaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17663189 |
atgaaatgtagcaagtagtctcttgatgttgtcctcttgtatgctgatagtagtgtctctggctttaggttttagcagcgtctttaatgccttggaaaag |
17663288 |
T |
|
| Q |
112 |
aaagcatgtgatagtagaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaatgtgtaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17663289 |
aaagcatgtgatagtagaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaatgtgtaa |
17663388 |
T |
|
| Q |
212 |
tttgaatgttctaattgtaattgtaattttaagttagaggtagttattaaatagaggaaaaatgtcaatgctacttatctaattgttatttcaatatttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17663389 |
tttgaatgttctaattgtaattgtaattttaagttagaggtagttattaaatagaggaaaaatgtcaatgctacttttctaactgttatttcaatatttg |
17663488 |
T |
|
| Q |
312 |
cattctaacaatcaaggcaaacttcaaaacaataccttcattacgtgtatagtgtaaatcc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17663489 |
cattctaacaatcaaggcaaacttcaaaacaataccttcattacgtatatagtgtaaatcc |
17663549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 20229266 - 20229120
Alignment:
| Q |
93 |
ctttaatgccttggaaaagaaagcatgtgatagtagaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcattttt |
192 |
Q |
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|||||||| |||||| ||||||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||| | || |
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| T |
20229266 |
ctttaatggcttggagaagaaagcaagtgatagtagaagaggaagaaatttctgtaagaacagatgagatgcttagcaactataggggttgcttacaatt |
20229167 |
T |
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| Q |
193 |
gttgtttctaaatgtgtaatttgaatgttctaattgtaattgtaatt |
239 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20229166 |
gttatttctaaatgtgtagtttgaatgttctaattgtaattgtaatt |
20229120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 17667267 - 17667348
Alignment:
| Q |
175 |
taggggttgctcatttttgttgtttctaaatgtgtaatttgaatgttctaattgtaattgtaattttaagttagaggtagtt |
256 |
Q |
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||||||||||| | | ||||| |||||||||||| | ||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
17667267 |
taggggttgcttactgttgttatttctaaatgtgcagtttgactgttctaattgtaattgtaattttcagttagagctagtt |
17667348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 14684936 - 14684572
Alignment:
| Q |
12 |
atgaaatgtagcaagtagtctcttgatgttgtcctct----tgtatgctgatagtagtgtctctggatttaggttttagcagcgtctttaatgccttgga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14684936 |
atgaaatgtagcaagtagtctcttgatgttgtcctctctcttgtatgctgatagtagtgtctctggctttaggttttagcagcgtctttaatgccttgga |
14684837 |
T |
|
| Q |
108 |
aaagaaagcatgtgatagtagaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaatgt |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14684836 |
aaagaaagcatgtgatagttgaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaatgt |
14684737 |
T |
|
| Q |
208 |
gtaatttgaatgttctaattgtaattgtaattttaagttagaggtagttattaaatagaggaaaaatgtcaatgctacttatctaattgttatttcaata |
307 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14684736 |
gtaatttgaatgttctaattgtaattgcaattttaagttagaggtagttattaaataaaggaaaaatgtcaatgctacttatctaattgttatttcaata |
14684637 |
T |
|
| Q |
308 |
tttgcattctaacaatcaaggcaaacttcaaaacaataccttcattacgtgtatagtgtaaatcc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
14684636 |
tttgcattctaacaatcaaggcaaacttcataacaataccttcattacgtatatagtgtaaatcc |
14684572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 14677127 - 14677075
Alignment:
| Q |
76 |
ttaggttttagcagcgtctttaatgccttggaaaagaaagcatgtgatagtag |
128 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
14677127 |
ttaggttttagcaggcactttaatgccttggagaagaaagcatgtgatagtag |
14677075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 54371617 - 54371724
Alignment:
| Q |
255 |
ttattaaatagaggaaaaatgtcaatgctacttatctaattgttatttcaatatttgcattctaacaatcaaggcaaacttcaaaacaataccttcatta |
354 |
Q |
| |
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|||||| ||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||| | ||| |||||||||||||||||||||| |
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| T |
54371617 |
ttattatatagaagaaaaatgccaatgctacttatctacttgttatttcaataattgcattctaa-aatc-acgcatgcttcaaaacaataccttcatta |
54371714 |
T |
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| Q |
355 |
cgtgtatagt |
364 |
Q |
| |
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||| |||||| |
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| T |
54371715 |
cgtatatagt |
54371724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 40393153 - 40393288
Alignment:
| Q |
100 |
gccttggaaaagaaagcatgtgatagtagaagagtaagaaatttctg----caagaacatatgagatgcttagcaattataggggttgctcatttttgtt |
195 |
Q |
| |
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|||| ||| |||| ||||||| | ||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
40393153 |
gcctcggagaagatagcatgtcacagtggaagaggaagaaatttctggcaagaagaacatatgagatgcttagcagctataggggttgctca---ttgtt |
40393249 |
T |
|
| Q |
196 |
gtttctaaa-tgtgtaatttgaatgttctaattgtaatt |
233 |
Q |
| |
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|||||||| |||||| |||||||| ||| ||||||||| |
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| T |
40393250 |
atttctaaattgtgtagtttgaatggtctcattgtaatt |
40393288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 40380972 - 40381030
Alignment:
| Q |
148 |
aagaacatatgagatgcttagcaattataggggttgctcatttttgttgtttctaaatg |
206 |
Q |
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||||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||| |
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| T |
40380972 |
aagaacatatgagatgcttagcagctgtaggggttgctcattgttgttatttttaaatg |
40381030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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