View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_low_7 (Length: 297)
Name: NF18100_low_7
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 7036270 - 7036542
Alignment:
| Q |
19 |
tcttggaatttggggaatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatatgaaagttgttattttatggct |
118 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7036270 |
tcttggaatttggggtatgcctggtattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatacgaaagttgttattttatggct |
7036369 |
T |
|
| Q |
119 |
aatgtaagagaagaatcagaaagatgtggaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaagatttgaaagatgaca |
218 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036370 |
aatgtaagagaagaatcagaaggatgtagaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaagatttgaaagatgaca |
7036469 |
T |
|
| Q |
219 |
tgataaatggattacctcctttggttaagaaaaggctaagccgcatgaaggttcttattgttcttgatgatgt |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036470 |
tgataaatggattacctcctttggttaagaaaaggctaagccgcatgaaggttcttattgttcttgatgatgt |
7036542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 7075692 - 7075419
Alignment:
| Q |
19 |
tcttggaatttggggaatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatatgaaagttgttattttatggct |
118 |
Q |
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||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||| |
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| T |
7075692 |
tcttggaatttggggtatgccaggtattggtaaaacaactattgctgaagaagtatttcgaagactacgttctgaatatgaaacttgttgttttatggct |
7075593 |
T |
|
| Q |
119 |
aatgtaagagaagaatcagaaagatgtggaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaagatttgaaagatgaca |
218 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7075592 |
aatgtaagagaagaatcagaaagatatggcacaaacagtttgaggttaagaaaaaagcttttatccactctattagaggatgaagatttgaaagatgaca |
7075493 |
T |
|
| Q |
219 |
tgataaatggattacctcctttggttaagaaaaggctaagccgcatgaaggttcttattgttcttgatgatgtc |
292 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7075492 |
tgataaatggattaccacctttggttaagaaaaggcttagccgcatgaaggttcttattgttcttgatgatgtc |
7075419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 7030562 - 7030827
Alignment:
| Q |
20 |
cttggaatttggggaatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatatgaaagttgttattttatggcta |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
7030562 |
cttggaatttggggtatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaagtacgaaagttgttattttatggcta |
7030661 |
T |
|
| Q |
120 |
atgtaagagaagaatcagaaagatgtggaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaagatttgaaagatgacat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||| |||||||| ||||||||||||| | |
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| T |
7030662 |
atgtaagagaagaatcagaaagatgtggaacaaacagtttgaggttaagaaaaattattttatccaccctattaaaggaagaaaatttgaaagatgaact |
7030761 |
T |
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| Q |
220 |
gataaatggattacctcctttggttaagaaaaggctaagccgcatgaaggttcttattgttcttga |
285 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
7030762 |
gataaatgggttacctcctttggttaagaaaaggcttcaccgtatgaaggttcttattgttcttga |
7030827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 7023172 - 7023445
Alignment:
| Q |
19 |
tcttggaatttggggaatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatatgaaagttgttattttatggct |
118 |
Q |
| |
|
|||| |||||||||| | | |||| ||||||||||||||| ||||||||||||| | |||||||||| ||||||||| || |||| || ||| |||||| |
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| T |
7023172 |
tcttcgaatttggggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagtttttgtttcatggct |
7023271 |
T |
|
| Q |
119 |
aatgtaagagaagaatcagaaagatgtggaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaagatttgaaagatgaca |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||| |||||||||| |||||||||||||| |||||||||||| || ||||||||| |
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| T |
7023272 |
aatgtaagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagaggaagaaaatacgaaagatgatc |
7023371 |
T |
|
| Q |
219 |
tgataaatggattacctcctttggttaagaaaaggctaagccgcatgaaggttcttattgttcttgatgatgtc |
292 |
Q |
| |
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||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7023372 |
tgataaatgaattacaacctttatttaataaaaggcttcgccgcatgaaggttcttattgttcttgatgatgtc |
7023445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 3817551 - 3817516
Alignment:
| Q |
257 |
agccgcatgaaggttcttattgttcttgatgatgtc |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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| T |
3817551 |
agccgcatgaaggttcttatcgttcttgatgatgtc |
3817516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 3919913 - 3919948
Alignment:
| Q |
257 |
agccgcatgaaggttcttattgttcttgatgatgtc |
292 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
3919913 |
agccgcatgaaggttcttatcgttcttgatgatgtc |
3919948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 3933138 - 3933172
Alignment:
| Q |
258 |
gccgcatgaaggttcttattgttcttgatgatgtc |
292 |
Q |
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|
|||||||||| |||||||||||||||||||||||| |
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| T |
3933138 |
gccgcatgaaagttcttattgttcttgatgatgtc |
3933172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 3954577 - 3954610
Alignment:
| Q |
258 |
gccgcatgaaggttcttattgttcttgatgatgt |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
3954577 |
gccgtatgaaggttcttattgttcttgatgatgt |
3954610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 3987177 - 3987128
Alignment:
| Q |
21 |
ttggaatttggggaatgcctgggattggtaaaacaactattgctgaagaa |
70 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||||||||||| |||||| |
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| T |
3987177 |
ttggaatttggggtatgcctggcattggcaagacaactattgcagaagaa |
3987128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 4002253 - 4002220
Alignment:
| Q |
258 |
gccgcatgaaggttcttattgttcttgatgatgt |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
4002253 |
gccgtatgaaggttcttattgttcttgatgatgt |
4002220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 4009945 - 4009917
Alignment:
| Q |
263 |
atgaaggttcttattgttcttgatgatgt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
4009945 |
atgaaggttcttattgttcttgatgatgt |
4009917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 13397899 - 13397871
Alignment:
| Q |
263 |
atgaaggttcttattgttcttgatgatgt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
13397899 |
atgaaggttcttattgttcttgatgatgt |
13397871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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