View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18101_low_2 (Length: 366)
Name: NF18101_low_2
Description: NF18101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18101_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 33 - 353
Target Start/End: Complemental strand, 52126837 - 52126517
Alignment:
| Q |
33 |
gctttcatgggttactatcatcaagctcagtacttgcaaatctctacttgaatccactatatgcaccattaatttcattcgaggtgcatctttgttgtcc |
132 |
Q |
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| T |
52126837 |
gctttcgtgggttactatcatcaagctctgtacttgcaaatctctacttgaatcaactatatgcaccattaatttcattggaggtgcatctttgttgtcc |
52126738 |
T |
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| Q |
133 |
atatcactaaaagattgattttaaggtgtttgatggtgaccttattctctataccatctttatttacaaggtattcatggaggtcattttgacttagnnn |
232 |
Q |
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| T |
52126737 |
atatcactaaaagattgattttaaggtgtttgatggtgaccttattctctataccatctttatttacaaggtattcatggaggtcattttgacttagttt |
52126638 |
T |
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| Q |
233 |
nnnnaacaactatttcaacttaattgataaaacaaacttaggtttatctggataacaagattaatttctgcttaggtgtttacgtcgtaactaaaaaatc |
332 |
Q |
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| T |
52126637 |
ttttaacaattatttcaacttaattgataaaacaaacttaggtctatctggataacaagattaatttctgcttagatgtttacgtcgtaactaaaaaatc |
52126538 |
T |
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| Q |
333 |
tttgccccactctaaaaatat |
353 |
Q |
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||||||||||||||||||||| |
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| T |
52126537 |
tttgccccactctaaaaatat |
52126517 |
T |
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