View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18101_low_3 (Length: 252)

Name: NF18101_low_3
Description: NF18101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18101_low_3
NF18101_low_3
[»] chr3 (3 HSPs)
chr3 (8-245)||(11897148-11897405)
chr3 (8-167)||(26432588-26432747)
chr3 (169-246)||(26432769-26432846)
[»] chr8 (2 HSPs)
chr8 (8-245)||(23132475-23132732)
chr8 (13-161)||(14760026-14760174)
[»] chr2 (2 HSPs)
chr2 (8-245)||(14653570-14653827)
chr2 (112-169)||(573285-573342)
[»] chr1 (2 HSPs)
chr1 (8-245)||(20284849-20285106)
chr1 (112-169)||(50451991-50452048)
[»] scaffold0036 (1 HSPs)
scaffold0036 (112-163)||(76006-76057)
[»] chr4 (2 HSPs)
chr4 (115-161)||(54477407-54477453)
chr4 (112-169)||(3881811-3881868)
[»] chr5 (1 HSPs)
chr5 (127-161)||(20585630-20585664)
[»] chr6 (1 HSPs)
chr6 (103-167)||(13599681-13599745)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  8 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  108 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                    |||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  188 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatgatgatgt 245  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 26432588 - 26432747
Alignment:
Q  8 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 107  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| || |||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  108 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag 167  Q
     || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggag 26432747  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 26432769 - 26432846
Alignment:
Q  169 cggcaacttgttcccattccaaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatgatgatgtc 246  Q
    |||||||||||||||||||||||||||||||||  | |  |||   || |||||||||||||| |||||| |||||||    
T  26432769 cggcaacttgttcccattccaaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

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Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  8 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  108 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||                    |||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  188 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatgatgatgt 245  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 14760174 - 14760026
Alignment:
Q  13 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaa 112  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| ||||| |||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  113 gcttttccatgcaaaggatgaagagataaggggacaacggatcaccttg 161  Q
    |||||||||| ||||| |||||||| || |||||||||||||| |||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttg 14760026  T

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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  8 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  108 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 187  Q
     || ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||                    ||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  188 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatgatgatgt 245  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 573342 - 573285
Alignment:
Q  112 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 169  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggc 573285  T

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Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  8 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  108 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcg--------------------gaggcggcaacttgttcccattc 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                     ||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  188 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatgatgatgt 245  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 50452048 - 50451991
Alignment:
Q  112 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 169  Q
    ||||| ||||| ||||| |||||||| ||||| || | ||||||||||||||||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggc 50451991  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 76057 - 76006
Alignment:
Q  112 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtc 163  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtc 76006  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 54477407 - 54477453
Alignment:
Q  115 ttttccatgcaaaggatgaagagataaggggacaacggatcaccttg 161  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttg 54477453  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3881868 - 3881811
Alignment:
Q  112 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 169  Q
    ||||||||||| ||||| |||||||| ||| | || | ||||||||||||||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggc 3881811  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 20585664 - 20585630
Alignment:
Q  127 aggatgaagagataaggggacaacggatcaccttg 161  Q
    ||||||||||||||||| |||||||||||||||||    
T  20585664 aggatgaagagataaggtgacaacggatcaccttg 20585630  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 13599745 - 13599681
Alignment:
Q  103 gcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag 167  Q
    ||||||||||| |||||||| || | ||||||||||||||| || |  ||||||||||| |||||    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggag 13599681  T

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