View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18102_high_3 (Length: 347)
Name: NF18102_high_3
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18102_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 108 - 347
Target Start/End: Complemental strand, 45540826 - 45540587
Alignment:
| Q |
108 |
atcttgatttgcattacctgtgacatttatagaagcgcacgtttgttcttggtttaatggttctaaagttggaaaagatgatgtccccgtatggatagta |
207 |
Q |
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| T |
45540826 |
atcttgatttgcattacttgtgacatttatagaagcgcacgtttgttcttggtttaatgattctaaagttggaaaagatgatgtccctgtatggatagta |
45540727 |
T |
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| Q |
208 |
tcatccactccctgttgtcctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatg |
307 |
Q |
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| T |
45540726 |
tcatccactccctgttgtcctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatg |
45540627 |
T |
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| Q |
308 |
atttaactacatcatcggagtcactgttatttgtatttgt |
347 |
Q |
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| T |
45540626 |
atttaactacatcatcggagtcactgttatttgtatttgt |
45540587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 45541011 - 45540897
Alignment:
| Q |
1 |
cgctccatcaattgtatcggcgggttttgtatctctggtcctttaattttgtggtgttctatgttttgattagacgaagttggcgtggagtgttctgcta |
100 |
Q |
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| T |
45541011 |
cgctccatcaattgtatcggcgggttttgtatctctggtcctttaattttgtggtgttctatgttttgattagacgaagttggcgtggagtgttctgcta |
45540912 |
T |
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| Q |
101 |
catctgaatcttgat |
115 |
Q |
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| T |
45540911 |
catctgaatgttgat |
45540897 |
T |
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