View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18102_low_2 (Length: 627)
Name: NF18102_low_2
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18102_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 49988670 - 49989026
Alignment:
| Q |
18 |
cataggttaaataatagaatttatataccaaattacgtctgttatgctttaaattatttcggattggttttaagtttcttttccccgaattattctctat |
117 |
Q |
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| T |
49988670 |
cataagttaaataatagaattt-tataccaaattacgtctgtggtgctttaaattatttcggattggttttaagtttcttttccccgaattattctctat |
49988768 |
T |
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| Q |
118 |
agttacattttgtttgtcttattagtgtttaagttatactcgtcttgcatcgttgtcttttatgttacatttcataattgtaggaatcaaatctcttgtt |
217 |
Q |
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| T |
49988769 |
agttacattttgtttgtcttattagtgtttaagttatgctcgtcttgcatcgttgtcttttatgttacatttcatgattgtagaaatcaaatctcttgtt |
49988868 |
T |
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| Q |
218 |
ctatgattagaggcgaatgacattgaagtgttcaatgaagacattgttgcaatttttggatttgaaaattttgattttaagaagtgaagggagagagaaa |
317 |
Q |
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| T |
49988869 |
ctacgattagaggcgaatgacattgaagtgttcaatgaagacattgttgcaatttttggatttgaaaattttgattttaagaagttaatggagaaagaaa |
49988968 |
T |
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| Q |
318 |
atggaagaaacacgggatgtctatttgaattatctcaatatattaaaatgtcttgcatga |
377 |
Q |
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| T |
49988969 |
atggaagaaacacgggatgtctatttgaattatctca--atattaaaatgtcttgcatga |
49989026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 389 - 611
Target Start/End: Original strand, 49989067 - 49989287
Alignment:
| Q |
389 |
aatagaacttgttaatctcaatattaaaatgtcttacatgannnnnnnnaatagaacttgttaaaaatgctaacaatgaaactgacttggtatgcaattt |
488 |
Q |
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| T |
49989067 |
aatagaacttgttaatctcaatattaaaatgtcttacatgattttttttaatagaacttgttaaaaatgctaacattgaaactgacttggtatgcaattt |
49989166 |
T |
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| Q |
489 |
aagttgtaggagattg-tttactgcgtgtaattttgtgcttttagtagtgtagtgaatctagaggtgtgttcttcactgattttccccactctcacataa |
587 |
Q |
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| T |
49989167 |
aagttgtaggagattgttttactacgtgtaattttgtgcttttagtagtgtagtgaatct---ggtgtgttcttcactgattttccccactttcacataa |
49989263 |
T |
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| Q |
588 |
tgcttcaaggaatgtggtgacttg |
611 |
Q |
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| T |
49989264 |
tgcttcaaggaatgtggtgacttg |
49989287 |
T |
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