View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18102_low_4 (Length: 407)

Name: NF18102_low_4
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18102_low_4
NF18102_low_4
[»] chr6 (20 HSPs)
chr6 (3-121)||(5066483-5066601)
chr6 (3-121)||(5426084-5426202)
chr6 (3-260)||(5397124-5397381)
chr6 (3-121)||(5157417-5157535)
chr6 (3-388)||(5354142-5354521)
chr6 (3-121)||(5370745-5370863)
chr6 (12-121)||(5350571-5350680)
chr6 (11-121)||(5137455-5137565)
chr6 (11-121)||(5102403-5102513)
chr6 (6-235)||(5284061-5284293)
chr6 (3-59)||(5181778-5181834)
chr6 (11-118)||(5128209-5128316)
chr6 (3-122)||(5689947-5690066)
chr6 (255-389)||(5434608-5434742)
chr6 (3-122)||(5073696-5073815)
chr6 (11-117)||(5096890-5096996)
chr6 (2-121)||(5383499-5383618)
chr6 (345-389)||(5097191-5097235)
chr6 (203-241)||(5073577-5073615)
chr6 (348-384)||(5426366-5426402)
[»] scaffold0294 (2 HSPs)
scaffold0294 (11-121)||(8689-8799)
scaffold0294 (204-257)||(8572-8625)
[»] chr7 (1 HSPs)
chr7 (3-80)||(36213659-36213736)
[»] chr3 (4 HSPs)
chr3 (3-52)||(47986730-47986779)
chr3 (3-52)||(47996017-47996066)
chr3 (3-52)||(48005304-48005353)
chr3 (3-52)||(48014589-48014638)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 5066601 - 5066483
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||  ||| ||||||||||| |||||| | |||||  |||||    
T  5066601 atcattttgtcttggatgtcaccaacaaataatctcccatccctatttcaaacatctactatcatgccatctcttgttcctttagatgtaccacatagta 5066502  T
Q  103 gttctcatgaactatcatc 121  Q
    | || ||||||||||||||    
T  5066501 gctcccatgaactatcatc 5066483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5426084 - 5426202
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  ||  ||||||||||||||| |||||| | |||||  |||||    
T  5426084 atcatttggtcttggatgtcaccaacaaataatctcccatccccatttcaaacatctgatatcatgtcatctcttgttcctttagatgtaccacatagta 5426183  T
Q  103 gttctcatgaactatcatc 121  Q
     ||| || |||||||||||    
T  5426184 attcccaggaactatcatc 5426202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 5397124 - 5397381
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| ||| ||| |||||||  |||||||||||||||  | | |||||||||||| || |||||    || |||||||||    
T  5397124 atcatttcgtcttggatgtcaccaacaattaacctcccatttccatttcaaacatctgctgccatgtcatctcttatttctttacacgtaacaagtagta 5397223  T
Q  103 gttctcatgaactatcatcttttcttaaccaacttccgagccgtcgaactttctgggtgaattgcaactccgacgatcaacgttctcatgacgcaacaac 202  Q
    |||| || |||||||||||||||   || |||||||| || | ||||| | | || ||| ||||||| || || ||||||| ||||| ||| |||| ||     
T  5397224 gttcgcacgaactatcatctttttcgaaacaacttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttgatgcaaaaat 5397323  T
Q  203 aattttggatgccttatattccataaattctaaagaattgggaccagctacaactaca 260  Q
    ||||||||||||  ||| | | | ||||||||||||||||| | || ||| |||||||    
T  5397324 aattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactaca 5397381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 5157535 - 5157417
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||  | | ||||||||||||||| |||||| | |||||  |||||    
T  5157535 atcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtcatctcttgttcctttagatgtaccacatagta 5157436  T
Q  103 gttctcatgaactatcatc 121  Q
     ||| || |||||||||||    
T  5157435 attcccaggaactatcatc 5157417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 388
Target Start/End: Complemental strand, 5354521 - 5354142
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||  | | ||||||||||||||| |||| | | |||| || ||||    
T  5354521 atcatttggtcttggatgtcaccaacaaataatctccgatctccatttcaaacatctgctgccatgtcatctcttgtttcttttgatgtaccgagcagta 5354422  T
Q  103 gttctcatgaactatcatcttttcttaaccaacttccgagccgtcgaactttctgggtgaattgcaactccgacgatcaacgttctcatgacgcaacaac 202  Q
    |||   ||||  |||||||||||  | |||| ||||| || | ||||| | |  ||||| ||||||| ||||  ||||||| |||||  || |||| |||    
T  5354421 gtttcaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaac 5354322  T
Q  203 aattttggatgccttatattccataaattctaaagaattgggaccagctacaactacaactacattacatgtatcaaatttgacttctactacgttaatt 302  Q
    ||||||| ||||| ||||| |||    |||||| ||||| | |       ||||| ||||||||| ||||| | |  || |||   ||  ||| ||||||    
T  5354321 aattttgaatgccctatatgccactgtttctaaggaatttgaa------tcaactgcaactacatcacatgcacctgatatgaagacttttacattaatt 5354228  T
Q  303 caatgttgcagtcaagagcacatttcaggatcaagacagtaattcaaatctcttttaattaaaatgggaatgaattgccaagtcac 388  Q
    ||| | |||||| ||| |||  |||||||||||  ||| |  ||||| |||||||||||| |||||||||||||||||||||||||    
T  5354227 caacgatgcagtgaagtgcatgtttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcac 5354142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5370745 - 5370863
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| ||||| |||||||| ||| ||||||||||| |  ||  ||||||||||||||| |||||| | |||||  |||||    
T  5370745 atcatttggtcttggatgtcaccaacaaattatctcccacccctatttcaaacatgtaatatgatgtcatctcttgttcctttagatgtaccacatagta 5370844  T
Q  103 gttctcatgaactatcatc 121  Q
    |||| ||||||||||||||    
T  5370845 gttcccatgaactatcatc 5370863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 5350571 - 5350680
Alignment:
Q  12 tcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcatg 111  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||   |  ||||||||||||||| |||||| | |||||  ||||||||| || |    
T  5350571 tcttggatgtcaccaacaaataatcacccatccccatttcaaacatctgacatcatgtcatctcttgttcctttagatgtaccacatagtagttcccagg 5350670  T
Q  112 aactatcatc 121  Q
    ||||||||||    
T  5350671 aactatcatc 5350680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 5137565 - 5137455
Alignment:
Q  11 gtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcat 110  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||||  ||  ||||||||||||||| || ||| | |||||  ||||||||| ||     
T  5137565 gtcttggatgtcaccaacaaataatctcccacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttcccac 5137466  T
Q  111 gaactatcatc 121  Q
    |||||||||||    
T  5137465 gaactatcatc 5137455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 5102513 - 5102403
Alignment:
Q  11 gtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcat 110  Q
    |||||||||||||||| |||||||||| ||| ||| |||||||||||||  ||  ||||||||||||||| || ||| | |||||  ||||||||| ||     
T  5102513 gtcttggatgtcaccaacaaataatcttccacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttcccac 5102414  T
Q  111 gaactatcatc 121  Q
    |||||||||||    
T  5102413 gaactatcatc 5102403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 5284293 - 5284061
Alignment:
Q  6 attttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttac---aatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    |||||||| ||||||||| || |||||||||||||||  ||||||||||  |||| | |   |||||||||||||||| |||||| | |||| |||| ||    
T  5284293 attttgtcatggatgtcagcaacaaataatctcccatttccatttcaaatttcttcttctgaaatgtcatctcttgtttctttagatgtaccgagtaata 5284194  T
Q  103 gttctcatgaactatcatcttttcttaaccaacttccgagccgtcgaactttctgggtgaattgcaactccgacgatcaacgttctcatgacgcaacaac 202  Q
    |    |||||||| ||||||||| |  ||| ||||||  | | || || | | |||||| ||||||||||||| ||||||| ||||| |||  ||||||     
T  5284193 gaatacatgaactttcatcttttttgtaccgacttccatggcttcaaagtctttgggtggattgcaactccgaagatcaactttctcttgattcaacaat 5284094  T
Q  203 aattttggatgccttatattccataaattctaa 235  Q
     ||||||||||| |||||| | || ||||||||    
T  5284093 gattttggatgctttatatgctatgaattctaa 5284061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 5181834 - 5181778
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatct 59  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  5181834 atcatttggtcttggatgtcaccgacaaataatctcccatccccatttcaaacatct 5181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 5128316 - 5128209
Alignment:
Q  11 gtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcat 110  Q
    |||||||||||||||| ||||| |||||||| ||| |||||||||||||  ||  ||||||||||||||| || ||| | |||||  ||||||||| ||     
T  5128316 gtcttggatgtcaccaacaaatgatctcccacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttcccac 5128217  T
Q  111 gaactatc 118  Q
    ||||||||    
T  5128216 gaactatc 5128209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5690066 - 5689947
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||| ||| |  |||  ||||||| ||| ||||||||  | | ||||||||||||||| |||||| | ||||| ||||||    
T  5690066 atcatttggtcttggatgtcaccaacaagtgctctttcatccccctttgaaacatctgctgccatgtcatctcttgtttctttagatataccatgtagta 5689967  T
Q  103 gttctcatgaactatcatct 122  Q
    ||||||| ||||| ||||||    
T  5689966 gttctcaggaactgtcatct 5689947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 389
Target Start/End: Original strand, 5434608 - 5434742
Alignment:
Q  255 actacaactacattacatgtatcaaatttgacttctactacgttaattcaatgttgcagtcaagagcacatttcaggatcaagacagtaattcaaatctc 354  Q
    ||||||||||||| ||| ||||||||| ||||| || |||| ||  ||||| | |||||| ||| |||| ||| |||||||| ||| |  ||||| ||||    
T  5434608 actacaactacatcacaagtatcaaatatgactacttctacattggttcaaagctgcagtgaagtgcacgttttaggatcaaaacattccttcaactctc 5434707  T
Q  355 ttttaattaaaatgggaatgaattgccaagtcacc 389  Q
    |||||||| ||||| ||||||||||| || |||||    
T  5434708 ttttaattcaaatgagaatgaattgcaaactcacc 5434742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5073815 - 5073696
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagta 102  Q
    ||||||| |||||||||||||||  ||||||||||| | ||||||||||| ||   |  | |||||||||| | |||| |||||| | ||| || |||||    
T  5073815 atcatttggtcttggatgtcaccgacaaataatctcacttccccatttcagacggttgctgcaatgtcatcccatgttcctttagatgtactaaatagta 5073716  T
Q  103 gttctcatgaactatcatct 122  Q
    |||| |||||||||||||||    
T  5073715 gttcccatgaactatcatct 5073696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 5096890 - 5096996
Alignment:
Q  11 gtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcat 110  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||  |   |||||||| |||||| || ||| | |||||| ||||||||| |||    
T  5096890 gtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccat 5096989  T
Q  111 gaactat 117  Q
    |||||||    
T  5096990 gaactat 5096996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 5383499 - 5383618
Alignment:
Q  2 catcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagt 101  Q
    |||||||  ||||||||||||  || ||||||||||||||| ||  |||||||||||   ||  |||||||||| |||| |||| | | ||||| |||||    
T  5383499 catcattaagtcttggatgtcctcaacaaataatctcccattccattttcaaacatcagctatcatgtcatctcatgttcctttcgatgtaccacgtagt 5383598  T
Q  102 agttctcatgaactatcatc 121  Q
    ||||| ||||| ||||||||    
T  5383599 agttcccatgacctatcatc 5383618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 5097191 - 5097235
Alignment:
Q  345 ttcaaatctcttttaattaaaatgggaatgaattgccaagtcacc 389  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||    
T  5097191 ttcaagtctcttttaattcaaatgggaacgaattgccaagtcacc 5097235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 5073615 - 5073577
Alignment:
Q  203 aattttggatgccttatattccataaattctaaagaatt 241  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  5073615 aattttggatgccttatatgccacaaattctaaagaatt 5073577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 5426366 - 5426402
Alignment:
Q  348 aaatctcttttaattaaaatgggaatgaattgccaag 384  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  5426366 aaatctcttttaattcaaattggaatgaattgccaag 5426402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 8799 - 8689
Alignment:
Q  11 gtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgttgctttaggtttaccaagtagtagttctcat 110  Q
    |||||||||||| ||| ||||||||||||||||    ||||||||||||  ||  |||||||||| |||| |||||| | ||||| |||||||||| ||     
T  8799 gtcttggatgtctccaacaaataatctcccatcttactttcaaacatctactatcatgtcatctcatgttcctttagatgtaccacgtagtagttcccag 8700  T
Q  111 gaactatcatc 121  Q
    |||||||||||    
T  8699 gaactatcatc 8689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 8625 - 8572
Alignment:
Q  204 attttggatgccttatattccataaattctaaagaattgggaccagctacaact 257  Q
    |||||||||||||||||| ||  ||||||||||||||||| |||| ||||||||    
T  8625 attttggatgccttatatgccgcaaattctaaagaattggaaccaactacaact 8572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 36213736 - 36213659
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttcaaacatcttttacaatgtcatctcttgtt 80  Q
    ||||||| |||||||||||||||| |||||  |||||| | || |||||||||||||  ||  |||||||||||||||    
T  36213736 atcatttggtcttggatgtcaccaacaaatgttctcccgttccgatttcaaacatctactatcatgtcatctcttgtt 36213659  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 47986779 - 47986730
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttca 52  Q
    ||||||| |||||||||||||||| ||||||||||| |||| ||||||||    
T  47986779 atcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 47986730  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 47996066 - 47996017
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttca 52  Q
    ||||||| |||||||||||||||| ||||||||||| |||| ||||||||    
T  47996066 atcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 47996017  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 48005353 - 48005304
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttca 52  Q
    ||||||| |||||||||||||||| ||||||||||| |||| ||||||||    
T  48005353 atcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 48005304  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 48014638 - 48014589
Alignment:
Q  3 atcattttgtcttggatgtcaccagcaaataatctcccatccccatttca 52  Q
    ||||||| |||||||||||||||| ||||||||||| |||| ||||||||    
T  48014638 atcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 48014589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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