View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18102_low_5 (Length: 350)

Name: NF18102_low_5
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18102_low_5
NF18102_low_5
[»] chr8 (24 HSPs)
chr8 (19-341)||(36355893-36356223)
chr8 (180-298)||(42636353-42636476)
chr8 (180-289)||(2258087-2258201)
chr8 (180-281)||(28207620-28207726)
chr8 (180-294)||(4384127-4384245)
chr8 (180-282)||(24695743-24695849)
chr8 (196-289)||(27801222-27801320)
chr8 (197-297)||(1135174-1135279)
chr8 (180-280)||(37813410-37813513)
chr8 (180-289)||(12684490-12684604)
chr8 (180-295)||(33013041-33013161)
chr8 (240-294)||(9735295-9735349)
chr8 (223-289)||(35901975-35902041)
chr8 (180-272)||(167857-167954)
chr8 (241-294)||(884478-884531)
chr8 (236-289)||(12829867-12829920)
chr8 (223-280)||(33067546-33067603)
chr8 (245-294)||(37427257-37427306)
chr8 (204-271)||(3520822-3520894)
chr8 (236-298)||(26750607-26750669)
chr8 (220-282)||(33949553-33949615)
chr8 (241-294)||(12954790-12954843)
chr8 (180-221)||(16723264-16723305)
chr8 (180-220)||(1876552-1876592)
[»] chr4 (35 HSPs)
chr4 (179-289)||(35777695-35777810)
chr4 (180-295)||(7852534-7852654)
chr4 (180-289)||(8297867-8297981)
chr4 (180-295)||(24175389-24175508)
chr4 (202-297)||(41462067-41462167)
chr4 (180-282)||(51834910-51835017)
chr4 (180-282)||(25115267-25115373)
chr4 (179-289)||(47995733-47995848)
chr4 (184-282)||(7444388-7444492)
chr4 (180-280)||(27953046-27953150)
chr4 (220-289)||(31429318-31429387)
chr4 (194-289)||(50341863-50341963)
chr4 (184-295)||(50426989-50427105)
chr4 (220-288)||(53014203-53014271)
chr4 (236-295)||(8261165-8261224)
chr4 (236-295)||(8274582-8274641)
chr4 (180-277)||(49084408-49084511)
chr4 (184-266)||(49400612-49400699)
chr4 (247-289)||(23605663-23605705)
chr4 (180-280)||(20394634-20394737)
chr4 (180-295)||(45900139-45900259)
chr4 (180-294)||(13585252-13585367)
chr4 (236-294)||(24229637-24229695)
chr4 (236-289)||(42223012-42223065)
chr4 (191-282)||(34391710-34391806)
chr4 (247-294)||(24396254-24396301)
chr4 (255-294)||(37060625-37060664)
chr4 (196-294)||(37440838-37440941)
chr4 (183-221)||(8260201-8260239)
chr4 (183-221)||(8273619-8273657)
chr4 (247-289)||(31174647-31174689)
chr4 (220-282)||(31690423-31690485)
chr4 (179-220)||(49951760-49951801)
chr4 (223-271)||(36702828-36702876)
chr4 (220-272)||(39195740-39195792)
[»] chr7 (19 HSPs)
chr7 (180-295)||(27123270-27123390)
chr7 (180-294)||(28770473-28770592)
chr7 (180-295)||(44537337-44537457)
chr7 (182-295)||(43234788-43234906)
chr7 (180-295)||(35496563-35496683)
chr7 (205-295)||(28663129-28663224)
chr7 (182-295)||(21727396-21727514)
chr7 (220-282)||(25886211-25886273)
chr7 (180-289)||(43224083-43224197)
chr7 (236-289)||(48488174-48488227)
chr7 (180-295)||(35731283-35731403)
chr7 (240-280)||(40753952-40753992)
chr7 (180-294)||(9718985-9719100)
chr7 (180-294)||(39320973-39321092)
chr7 (220-294)||(7653617-7653691)
chr7 (202-266)||(42936025-42936093)
chr7 (194-295)||(3692887-3692994)
chr7 (228-295)||(14651380-14651447)
chr7 (231-282)||(26239544-26239595)
[»] chr5 (17 HSPs)
chr5 (179-294)||(18229593-18229713)
chr5 (180-298)||(30104800-30104923)
chr5 (180-288)||(30501137-30501250)
chr5 (180-288)||(30541480-30541593)
chr5 (180-295)||(34899126-34899246)
chr5 (236-295)||(7968447-7968506)
chr5 (180-294)||(16667283-16667402)
chr5 (182-289)||(9276576-9276688)
chr5 (180-294)||(7719200-7719319)
chr5 (180-298)||(39558754-39558877)
chr5 (220-295)||(2918586-2918662)
chr5 (184-289)||(17692262-17692372)
chr5 (180-272)||(40530448-40530545)
chr5 (228-280)||(23117232-23117284)
chr5 (180-282)||(15720063-15720170)
chr5 (236-298)||(8221179-8221241)
chr5 (229-289)||(41048036-41048096)
[»] chr1 (18 HSPs)
chr1 (180-298)||(2864139-2864261)
chr1 (220-295)||(31889203-31889279)
chr1 (180-282)||(47187824-47187931)
chr1 (220-282)||(43397018-43397080)
chr1 (184-294)||(44829272-44829386)
chr1 (180-295)||(39150578-39150698)
chr1 (179-280)||(48022358-48022464)
chr1 (179-295)||(38748711-38748832)
chr1 (180-267)||(38491217-38491309)
chr1 (229-282)||(34409784-34409836)
chr1 (180-282)||(32562357-32562463)
chr1 (179-221)||(8794411-8794453)
chr1 (180-221)||(2995040-2995081)
chr1 (220-289)||(4851241-4851310)
chr1 (220-289)||(17552874-17552943)
chr1 (179-220)||(33791809-33791850)
chr1 (180-220)||(39973888-39973928)
chr1 (180-220)||(42573839-42573879)
[»] chr2 (12 HSPs)
chr2 (180-298)||(1334871-1334994)
chr2 (179-289)||(19890185-19890300)
chr2 (180-298)||(34904775-34904898)
chr2 (180-295)||(9448944-9449063)
chr2 (179-289)||(31017304-31017419)
chr2 (182-291)||(31452341-31452454)
chr2 (182-258)||(14295626-14295707)
chr2 (183-277)||(38533877-38533975)
chr2 (228-289)||(33074870-33074930)
chr2 (180-291)||(20064907-20065022)
chr2 (220-277)||(38533354-38533411)
chr2 (220-280)||(37993119-37993179)
[»] chr3 (11 HSPs)
chr3 (202-289)||(29083895-29083988)
chr3 (180-278)||(42846012-42846116)
chr3 (229-294)||(51351327-51351392)
chr3 (220-288)||(40673475-40673543)
chr3 (191-271)||(49362368-49362453)
chr3 (238-294)||(12086754-12086810)
chr3 (220-272)||(42939873-42939925)
chr3 (180-271)||(52638173-52638268)
chr3 (245-280)||(26143164-26143199)
chr3 (220-295)||(26900013-26900088)
chr3 (180-282)||(48180174-48180281)
[»] scaffold0268 (1 HSPs)
scaffold0268 (220-294)||(20240-20313)
[»] chr6 (12 HSPs)
chr6 (204-280)||(1841003-1841084)
chr6 (220-289)||(31855095-31855164)
chr6 (196-294)||(17215674-17215777)
chr6 (223-298)||(32823721-32823796)
chr6 (180-266)||(2692449-2692540)
chr6 (236-289)||(30801798-30801851)
chr6 (223-294)||(7421716-7421787)
chr6 (229-295)||(9762852-9762919)
chr6 (220-283)||(24103780-24103843)
chr6 (220-295)||(34231946-34232020)
chr6 (220-280)||(2864917-2864978)
chr6 (230-299)||(30739650-30739719)
[»] scaffold0036 (1 HSPs)
scaffold0036 (179-289)||(62521-62636)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 36356223 - 36355893
Alignment:
Q  19 tcgttgaccatttgaataaagaattaactgattccaaattcatcttcattaacagtgctgtcataagacttagtcagttaaagctacaaggtatttcaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36356223 tcgttgaccatttgaataaagaattaactgattccaaattcatcttcattaacagtgctgtcataagacttagtcagttaaagctacaaggtatttcaaa 36356124  T
Q  119 cattttttattccgataacaaatatgccaaatcgtgttttcataagacatggggtcttgttactctttaagaatcccaaattaagtaattattcttttaa 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36356123 cattttttattccgataacaaatattccaaatcgtgttttcataagacatggggtcttgttactctttaagaatcccaaattaagtaattattcttttaa 36356024  T
Q  219 aaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgctccaca--------ttaacatta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||        |||||||||    
T  36356023 aaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgtcccacatgcactcgttaacatta 36355924  T
Q  311 tggttgctgtaataactataaacatgatgat 341  Q
    |||||||||||||||||||||||||| ||||    
T  36355923 tggttgctgtaataactataaacatgttgat 36355893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 42636476 - 42636353
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |||||||||| ||  |||||     ||||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  42636476 actctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttacca 42636377  T
Q  275 tttaaagtacttaaatagtgctcc 298  Q
    |||||||| |||||| ||||||||    
T  42636376 tttaaagtgcttaaagagtgctcc 42636353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 2258201 - 2258087
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| | |||||||||||||||||| |     ||| |||||| ||||| |||||||||||||||||||||| |||||||||||    
T  2258201 actctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcatttaaaacttacca 2258102  T
Q  275 tttaaagtacttaaa 289  Q
    |||||||| ||||||    
T  2258101 tttaaagtgcttaaa 2258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 28207620 - 28207726
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |  ||| |||||||||||||     ||||| ||||||| |||||||| |||||||||||||||||||||||||| |||    
T  28207620 actctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttcca 28207719  T
Q  275 tttaaag 281  Q
    |||||||    
T  28207720 tttaaag 28207726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 4384245 - 4384127
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| | || ||||| ||||||||||||||||||||     ||||| ||||||| |||||||| |||||||||| |||||||||||| ||| ||    
T  4384245 actctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatca 4384147  T
Q  275 tttaaagtacttaaatagtg 294  Q
    |||||||| |||||| ||||    
T  4384146 tttaaagtgcttaaagagtg 4384127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 24695743 - 24695849
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||||||||  |||| |||||||||| |||||||||     ||||| |||||||||||||| | |||||||||||||| ||| ||||||||| |    
T  24695743 actctttaagaatccagaatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttttatt-aaaacttacta 24695841  T
Q  275 tttaaagt 282  Q
    ||||||||    
T  24695842 tttaaagt 24695849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 27801320 - 27801222
Alignment:
Q  196 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||| ||||||||||||||||||||     ||||| ||||||  |||||||| | |||||||||||| ||||||||||||| ||||||||| ||||||    
T  27801320 aaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaa 27801222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 1135174 - 1135279
Alignment:
Q  197 aattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaata 291  Q
    |||| ||||||||||||||||||||     ||||| ||||||  |||| ||| |||| |||||||||| ||||||||||||||||||||||  ||||| |    
T  1135174 aatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaaga 1135273  T
Q  292 gtgctc 297  Q
    ||||||    
T  1135274 gtgctc 1135279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 37813513 - 37813410
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa------aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    |||||||||| |||||||||| ||||||||||||||||||      ||| ||| ||||||| |||||||| |||||||||||||||||   ||||||||     
T  37813513 actctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcat---aaacttact 37813417  T
Q  274 atttaaa 280  Q
    |||||||    
T  37813416 atttaaa 37813410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 12684604 - 12684490
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||||||| | |||||||||||| |||     ||||||| |||||||||||||||| | |||| ||||||| |||||||| |||  |    
T  12684604 actctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttatta 12684505  T
Q  275 tttaaagtacttaaa 289  Q
    |||||||| ||||||    
T  12684504 tttaaagtgcttaaa 12684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 33013041 - 33013161
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||||||| |  |||||||||||||||||     ||||| ||||||| |||| | | ||||||||||||||||| || ||||||| |    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttacta 33013140  T
Q  275 tttaaagtacttaaatagtgc 295  Q
     ||||||| |||||| |||||    
T  33013141 attaaagtgcttaaagagtgc 33013161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 9735349 - 9735295
Alignment:
Q  240 catttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||||||||||||||||||||||||| ||| |||||||| || ||||| ||||    
T  9735349 catttaatacacaacttttcattaaaaatttatcatttaaaatatttaaaaagtg 9735295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 35901975 - 35902041
Alignment:
Q  223 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||| ||||||| |||||||| |||||| ||||||||||||||||||||  ||||||| | ||||||    
T  35901975 tattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaaa 35902041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 167954 - 167857
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 272  Q
    |||||||||| ||| |||||| |  |||||||||||||||||     |||||  |||||| |||||||||| |||| ||||||||||| |||||||||    
T  167954 actctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattacataacttttcatttaaaacttac 167857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 884478 - 884531
Alignment:
Q  241 atttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    ||||||||||||| |||||||||||||||| | ||||||||| |||||| ||||    
T  884478 atttaatacacaatttttcattaaaaactttcaatttaaagtgcttaaagagtg 884531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 12829920 - 12829867
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||| |||| | || |||||||||||||||||||||||||||| ||||||    
T  12829920 aatgcattcaatatataatttttcattaaaaacttaccatttaaagtgcttaaa 12829867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 33067546 - 33067603
Alignment:
Q  223 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 280  Q
    |||| |||| ||||||||||| |||||| ||||||||||| ||||||||| |||||||    
T  33067546 tattacaatgtctaatgcattcaatacaaaacttttcatttaaaacttactatttaaa 33067603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 37427257 - 37427306
Alignment:
Q  245 aatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||| ||||    
T  37427257 aatactcaacttttcattaaaatcttaccatttaaagtgcttaaagagtg 37427306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 3520894 - 3520822
Alignment:
Q  204 taattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 271  Q
    ||||||||||||||||||     ||||| || ||| ||||||||| |||||| ||||||||||||||||||||    
T  3520894 taattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaactta 3520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 26750607 - 26750669
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgctcc 298  Q
    |||||||| ||| || || |||||||||||| ||||| ||||||||| |||||| ||||||||    
T  26750607 aatgcattcaatgcataatttttcattaaaatcttactatttaaagtgcttaaagagtgctcc 26750669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 33949615 - 33949553
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    ||||||| ||||||| |||||| | ||||||||||||||||| || ||||||| | |||||||    
T  33949615 aactattacaatttcaaatgcactcaatacacaacttttcataaataacttactaattaaagt 33949553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 12954790 - 12954843
Alignment:
Q  241 atttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    ||||||||||||| |||||| |||||| ||| |||||||||||| |||| ||||    
T  12954790 atttaatacacaatttttcaataaaaatttatcatttaaagtacataaagagtg 12954843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 16723305 - 16723264
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa 221  Q
    |||||||||| ||||||||||  |||||||||||||||||||    
T  16723305 actctttaagcatcccaaattttgtaattattcttttaaaaa 16723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 1876592 - 1876552
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa 220  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  1876592 actctttaagcatgctaaattaagtaattattcttttaaaa 1876552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 35777810 - 35777695
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||  |||||||||| ||||||||||||||||||||     ||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  35777810 tactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttacc 35777711  T
Q  274 atttaaagtacttaaa 289  Q
    ||||||||| ||||||    
T  35777710 atttaaagtgcttaaa 35777695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 7852654 - 7852534
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||  ||||||||||||||||||||||||||||||||||||| |    
T  7852654 actctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttacta 7852555  T
Q  275 tttaaagtacttaaatagtgc 295  Q
    |||||||| |||||| |||||    
T  7852554 tttaaagtgcttaaagagtgc 7852534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 8297867 - 8297981
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa-----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |||||||||||||||||||     ||| || ||||||| |||||||| ||||||||| |||||||||||||||||| |    
T  8297867 actctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttacta 8297966  T
Q  275 tttaaagtacttaaa 289  Q
    |||||||| ||||||    
T  8297967 tttaaagtgcttaaa 8297981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 24175508 - 24175389
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 275  Q
    |||||||||| |||| ||||| ||||| |||||||||||||    |||||| ||||||  |||||||||||||||||||||||| |  ||||||||||||    
T  24175508 actctttaagcatcctaaatttagtaaatattcttttaaaagtaaactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccat 24175409  T
Q  276 ttaaagtacttaaatagtgc 295  Q
    ||||||| |||||| |||||    
T  24175408 ttaaagtgcttaaagagtgc 24175389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 41462067 - 41462167
Alignment:
Q  202 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgct 296  Q
    ||||||||||||||||||||     ||||| |||||||| |||||||||||||| || |||||||||||||||||| ||||||| | |||||| ||||||    
T  41462067 agtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaaatgcttaaagagtgct 41462166  T
Q  297 c 297  Q
    |    
T  41462167 c 41462167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 51834910 - 51835017
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||| || |||||||||||||||||     |||||  |||||| |||||||| ||||||||||||||||||||||| |||| |    
T  51834910 actctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttacta 51835009  T
Q  275 tttaaagt 282  Q
    ||||||||    
T  51835010 tttaaagt 51835017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 25115373 - 25115267
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||||| | |||||||||||||| | ||||||||||| |    
T  25115373 actctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttacta 25115275  T
Q  275 tttaaagt 282  Q
    ||||||||    
T  25115274 tttaaagt 25115267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 47995848 - 47995733
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||| || | ||||| |||||||| ||||||||||| |     ||| ||||||  |||||||| |||||| |||||||||||||||||||||     
T  47995848 tactctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttaca 47995749  T
Q  274 atttaaagtacttaaa 289  Q
    ||||||||| ||||||    
T  47995748 atttaaagtgcttaaa 47995733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 7444492 - 7444388
Alignment:
Q  184 tttaagaatcccaaattaagtaattattcttttaaaaa------ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 277  Q
    |||||| |||||||||| ||||||||| ||||||||||      ||||| ||||||  |||||||| ||||||||||||||| |||||||||||  ||||    
T  7444492 tttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtattt 7444393  T
Q  278 aaagt 282  Q
    |||||    
T  7444392 aaagt 7444388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 27953150 - 27953046
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| ||| |||||| |||| ||||| |||||||||     ||||| ||||||  |||||||| ||||||||||||||| ||||||||||||||    
T  27953150 actctttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttacca 27953052  T
Q  275 tttaaa 280  Q
    ||||||    
T  27953051 tttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 31429318 - 31429387
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||||||| | ||||||| ||||||    
T  31429318 aactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaa 31429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 289
Target Start/End: Complemental strand, 50341963 - 50341863
Alignment:
Q  194 ccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaa 288  Q
    ||||||| ||||||||||||||||||||     ||||| ||||||| || ||||| |||||||||||||||||| |||| |||| || |||||| |||||    
T  50341963 ccaaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaa 50341864  T
Q  289 a 289  Q
    |    
T  50341863 a 50341863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 50426989 - 50427105
Alignment:
Q  184 tttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 278  Q
    |||||| ||| |||||| ||||||||||||||| ||     ||||||| ||||||| |||||| | || |||||||||||||||||||| |||| |||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactattta 50427088  T
Q  279 aagtacttaaatagtgc 295  Q
    ||||  ||||| |||||    
T  50427089 aagtgtttaaagagtgc 50427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 53014271 - 53014203
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaa 288  Q
    ||||||| ||||||| ||| |||| |||||||||||||| ||||||||| ||||||||||||| |||||    
T  53014271 aactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgcttaa 53014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 8261165 - 8261224
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||| || |||||    
T  8261165 aatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgc 8261224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 8274582 - 8274641
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||| || |||||    
T  8274582 aatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgc 8274641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 49084511 - 49084408
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcattt-aatacacaacttttcattaaaaacttacc 273  Q
    |||||||||  |||| ||||| ||||||||||||||||||||     ||||| ||||||  |||| | || |||||||||||||||||||||||||||||    
T  49084511 actctttaattatcctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttacc 49084412  T
Q  274 attt 277  Q
    ||||    
T  49084411 attt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 49400612 - 49400699
Alignment:
Q  184 tttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaa 266  Q
    |||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  49400612 tttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaa 49400699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 23605705 - 23605663
Alignment:
Q  247 tacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  23605705 tacacaacttttcattaaaaacttaccatttaaagtgcttaaa 23605663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 20394634 - 20394737
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| ||||||||||||||||||     ||||||| ||||||| ||| |||| |||||| |  |||||||||||||||| |||    
T  20394634 actctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca-acattttcattaaaaactt-cca 20394731  T
Q  275 tttaaa 280  Q
    ||||||    
T  20394732 tttaaa 20394737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 45900259 - 45900139
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||| || ||||||||||||| |||     ||||  ||||||| |||||||| |||||||||||||||||   |||||||| |    
T  45900259 actctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttacta 45900160  T
Q  275 tttaaagtacttaaatagtgc 295  Q
     ||||||| |||||| |||||    
T  45900159 attaaagtgcttaaagagtgc 45900139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 13585367 - 13585252
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattctttt-aaaaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 278  Q
    |||||||||| || | ||||| || ||||||| |||| ||||||| || ||||||  |||| ||| | |||| ||||||||||  |||||||||||||||    
T  13585367 actctttaagcattctaaatttagaaattattattttcaaaaactgttacaattttcaatgtattcattacataacttttcatataaaacttaccattta 13585268  T
Q  279 aagtacttaaatagtg 294  Q
    |||| |||||| ||||    
T  13585267 aagtgcttaaagagtg 13585252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 24229695 - 24229637
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||||||||||||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  24229695 aatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaagagtg 24229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 42223012 - 42223065
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||| ||||||||| |||| ||||||||||||||| || |||||||||||    
T  42223012 aatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaa 42223065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 34391806 - 34391710
Alignment:
Q  191 atcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    |||| ||||| |||||||||||||||| ||| |     ||| ||||||| |||||| | |||||||||||||| ||||||||||||| |||| ||||    
T  34391806 atccaaaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagt 34391710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 24396254 - 24396301
Alignment:
Q  247 tacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||| ||||||||||  |||||||||||||||||||||||||| ||||    
T  24396254 tacataacttttcatataaaacttaccatttaaagtacttaaagagtg 24396301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 37060625 - 37060664
Alignment:
Q  255 ttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  37060625 ttttcattaaaaacttaccatttaaagtgcttaaaaagtg 37060664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 37440838 - 37440941
Alignment:
Q  196 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaat 290  Q
    ||||| |||||||||| |||||||||     ||||| ||||||  ||||  || |||||| || ||||||||| ||| |||||||||||||||||||||     
T  37440838 aaatttagtaattattattttaaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaag 37440937  T
Q  291 agtg 294  Q
    ||||    
T  37440938 agtg 37440941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 8260201 - 8260239
Alignment:
Q  183 ctttaagaatcccaaattaagtaattattcttttaaaaa 221  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8260201 ctttaagcatcccaaatttagtaattattcttttaaaaa 8260239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 8273619 - 8273657
Alignment:
Q  183 ctttaagaatcccaaattaagtaattattcttttaaaaa 221  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8273619 ctttaagcatcccaaatttagtaattattcttttaaaaa 8273657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 31174689 - 31174647
Alignment:
Q  247 tacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||    
T  31174689 tacacaacttttcattaaaaatttatcatttaaagtatttaaa 31174647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 31690423 - 31690485
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    |||| |||||||||  |||||||| ||||||||||||||||| | ||| |||| |||||||||    
T  31690423 aactgttgcaattttcaatgcattgaatacacaacttttcataagaaatttactatttaaagt 31690485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 49951801 - 49951760
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaa 220  Q
    ||||||||||| || | |||||||||||||||||||||||||    
T  49951801 tactctttaagcatgctaaattaagtaattattcttttaaaa 49951760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 36702828 - 36702876
Alignment:
Q  223 tattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 271  Q
    |||| ||||||  |||||||| ||||||||| |||||||||||||||||    
T  36702828 tattacaattttcaatgcattcaatacacaatttttcattaaaaactta 36702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 39195792 - 39195740
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 272  Q
    ||||||| ||||||  |||||||| |||||||||||||||||  |||||||||    
T  39195792 aactattacaattttcaatgcattgaatacacaacttttcatataaaacttac 39195740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 27123270 - 27123390
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |||||| |||||||||||||     ||||| ||||||| |||||||| | ||||||||||||| ||||||||||||||    
T  27123270 actctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttacca 27123369  T
Q  275 tttaaagtacttaaatagtgc 295  Q
    |||||||| |||||| |||||    
T  27123370 tttaaagtgcttaaagagtgc 27123390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 28770473 - 28770592
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||| | ||||||||||||||| ||     ||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |    
T  28770473 actctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttacta 28770572  T
Q  275 tttaaagtacttaaatagtg 294  Q
    |||| ||| |||||| ||||    
T  28770573 tttagagtgcttaaagagtg 28770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 44537337 - 44537457
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||| ||| ||||||||||||||||||||     |||||  |||||| | || || ||||||| ||||||||||||||||||||| |    
T  44537337 actctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttacta 44537436  T
Q  275 tttaaagtacttaaatagtgc 295  Q
    |||||||| |||||| |||||    
T  44537437 tttaaagtgcttaaagagtgc 44537457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 43234788 - 43234906
Alignment:
Q  182 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 276  Q
    |||||||| |||| | ||| ||||||||||||||||||||     ||||| ||||||| | | |||| |||||| |||||||||||||||| |||| |||    
T  43234788 tctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatt 43234887  T
Q  277 taaagtacttaaatagtgc 295  Q
    |||||| |||||| |||||    
T  43234888 taaagtgcttaaagagtgc 43234906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 35496683 - 35496563
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||| ||||| |||  |||||||||     ||||| ||||||  |||||||| | ||||||| ||||||||||||||||||||    
T  35496683 actctttaagcatccaaaatttagtaactatatttttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttacca 35496584  T
Q  275 tttaaagtacttaaatagtgc 295  Q
    ||||||||  ||||| |||||    
T  35496583 tttaaagtgtttaaagagtgc 35496563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 28663224 - 28663129
Alignment:
Q  205 aattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    |||||||||||||||     ||||||| ||||||  |||||||| ||||||||| |||||||||||| ||||| ||||||||| |||||| |||||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgc 28663129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 21727514 - 21727396
Alignment:
Q  182 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 276  Q
    |||||||| ||| | |||| ||||||||||||||||||||     ||||| ||||||| ||| |||| ||||||||| | || |||||||||||| ||||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatt 21727415  T
Q  277 taaagtacttaaatagtgc 295  Q
    | |||| |||||| |||||    
T  21727414 tgaagtgcttaaagagtgc 21727396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 25886211 - 25886273
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    ||||||| ||||||  ||| ||||||||||||||||||||||  |||||||||||||||||||    
T  25886211 aactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaagt 25886273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 43224197 - 43224083
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||| | ||  ||||||||||||||||     || || ||||||| |||| || ||||||||||||||||||||||||||| | |    
T  43224197 actctttaagcatcctaaaattagatattattcttttaaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgcta 43224098  T
Q  275 tttaaagtacttaaa 289  Q
    |||||||| ||||||    
T  43224097 tttaaagtgcttaaa 43224083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 48488227 - 48488174
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||| |||||| |||||||||||||||||||| |||||||||| ||||||    
T  48488227 aatgcattgaatacataacttttcattaaaaacttatcatttaaagtgcttaaa 48488174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 35731283 - 35731403
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||||||| |  || ||||||||||||||     ||||| ||||||| |||||| |||||||||||||||| || || ||||||| |    
T  35731283 actctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttacta 35731382  T
Q  275 tttaaagtacttaaatagtgc 295  Q
     ||||||| |||||| |||||    
T  35731383 attaaagtgcttaaagagtgc 35731403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 40753992 - 40753952
Alignment:
Q  240 catttaatacacaacttttcattaaaaacttaccatttaaa 280  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  40753992 catttaatacacaacttttcattaaaaacttatcatttaaa 40753952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 9719100 - 9718985
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattctttt-aaaaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 278  Q
    |||||||||| || | ||||| || ||||||| |||| ||||||| || ||||||  |||| ||| | |||| ||||||||||  |||||||||||||||    
T  9719100 actctttaagcattctaaatttagaaattattattttcaaaaactgttacaattttcaatgtattcattacataacttttcatataaaacttaccattta 9719001  T
Q  279 aagtacttaaatagtg 294  Q
    |||| |||||| ||||    
T  9719000 aagtgcttaaagagtg 9718985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 39321092 - 39320973
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||||||| |  |||||||||||||||||     ||||| ||||||  |||| ||| |||||||||||||| || |||||||||| |    
T  39321092 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttacta 39320993  T
Q  275 tttaaagtacttaaatagtg 294  Q
     ||||||| |||||| ||||    
T  39320992 attaaagtgcttaaagagtg 39320973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 7653617 - 7653691
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||||  |||||| ||| |||| | ||||||||||||||||||||||||||  |||||||| |||||| ||||    
T  7653617 aactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtg 7653691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 42936025 - 42936093
Alignment:
Q  202 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaa 266  Q
    ||||||||||||||||||||     ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  42936025 agtaattattcttttaaaaaatcaactattacaatttc-aatgcatttaatacacaatttttcattaaaa 42936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 3692887 - 3692994
Alignment:
Q  194 ccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcat-taaaaacttaccatttaaagtactta 287  Q
    ||||||| || |||||||||||||||     ||||||| ||||||| |||||| | ||||||||| |||||||  |||||||||| | ||||| ||||||    
T  3692887 ccaaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatactta 3692986  T
Q  288 aatagtgc 295  Q
    || |||||    
T  3692987 aagagtgc 3692994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 14651447 - 14651380
Alignment:
Q  228 caatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||| |||||| | | |||||||||||||||||||||| ||| |||| |||| |||||| |||||    
T  14651447 caatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgc 14651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 26239595 - 26239544
Alignment:
Q  231 tttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    |||| |||||||| |||| |||| |||||||||||||||||| |||||||||    
T  26239595 tttccaatgcattgaatatacaatttttcattaaaaacttactatttaaagt 26239544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 18229713 - 18229593
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||| |||||||||| ||||||||||||||||||||     ||||| ||||||| ||| |||| |||| |||| |||||||||||||||||||    
T  18229713 tactctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttacc 18229614  T
Q  274 atttaaagtacttaaatagtg 294  Q
    ||||||||| |||||| ||||    
T  18229613 atttaaagtgcttaaagagtg 18229593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 30104800 - 30104923
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| ||||| |||| ||||||||| |     ||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30104800 actctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttacca 30104899  T
Q  275 tttaaagtacttaaatagtgctcc 298  Q
     |||||||  ||||| ||||||||    
T  30104900 cttaaagtgtttaaagagtgctcc 30104923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 30501250 - 30501137
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |||||||||||||||||||| |     ||| ||||||| ||| |||| |||||||||||||||||| ||||||||| |    
T  30501250 actctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttacta 30501151  T
Q  275 tttaaagtacttaa 288  Q
    |||||||| |||||    
T  30501150 tttaaagtgcttaa 30501137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 30541593 - 30541480
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| |||||||||||||||||||| |     ||| ||||||| ||| |||| |||||||||||||||||| ||||||||| |    
T  30541593 actctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttacta 30541494  T
Q  275 tttaaagtacttaa 288  Q
    |||||||| |||||    
T  30541493 tttaaagtgcttaa 30541480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 34899246 - 34899126
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaac-----tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||  ||||||||||||||||||||      |||| ||||||||||||||||||||| | ||||||||||| ||||||||| |    
T  34899246 actctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttacta 34899147  T
Q  275 tttaaagtacttaaatagtgc 295  Q
    ||||||||  ||||| |||||    
T  34899146 tttaaagtgtttaaagagtgc 34899126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 7968447 - 7968506
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  7968447 aatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 7968506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 16667402 - 16667283
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| ||| |||||| | |||||||||||||||||| |     ||| ||||||| ||| |||| ||||||||| |||||||||||||||||| |    
T  16667402 actctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttacta 16667303  T
Q  275 tttaaagtacttaaatagtg 294  Q
    |||||||| |||||| ||||    
T  16667302 tttaaagtgcttaaaaagtg 16667283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 9276688 - 9276576
Alignment:
Q  182 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 276  Q
    |||| ||| |||||||||| |||||||||| |||||||||     |||||  |||||  |||||||| |||||| ||||||||||||||||||||| |||    
T  9276688 tcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatt 9276589  T
Q  277 taaagtacttaaa 289  Q
    |||||| ||||||    
T  9276588 taaagtgcttaaa 9276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 7719200 - 7719319
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||| ||| |  |||||||||||||||||     ||||| ||||||| |||  ||| |||||||||||||||||||||||||||  |    
T  7719200 actctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttatta 7719299  T
Q  275 tttaaagtacttaaatagtg 294  Q
    |||||||| |||||| ||||    
T  7719300 tttaaagtgcttaaaaagtg 7719319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 39558877 - 39558754
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| || ||| ||| ||||||||||| ||||||||     || || ||||||| ||||||||| |||||| |||||||| ||||||||||| |    
T  39558877 actctttaagtattccatatttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttacta 39558778  T
Q  275 tttaaagtacttaaatagtgctcc 298  Q
    |||||| | |||||  ||||||||    
T  39558777 tttaaaatgcttaagaagtgctcc 39558754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 2918662 - 2918586
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaa-cttaccatttaaagtacttaaatagtgc 295  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||  |||| ||||||| | |||||| |||||    
T  2918662 aactattataatttccaatgcatttaatacacaacttttcattaaaaattttacaatttaaaatgcttaaagagtgc 2918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 17692262 - 17692372
Alignment:
Q  184 tttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 278  Q
    |||||| |||| ||||| |||||||||||| |||||||     || || ||||||  |||||| ||| |||||||||||||||||||||| ||| ||||     
T  17692262 tttaagcatcctaaatttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactatttt 17692361  T
Q  279 aagtacttaaa 289  Q
    |||| ||||||    
T  17692362 aagtgcttaaa 17692372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 40530545 - 40530448
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 272  Q
    |||||||||  ||| || ||| |||||||||| |||||||||     ||||  ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  40530545 actctttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttac 40530448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 23117284 - 23117232
Alignment:
Q  228 caatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 280  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||| |||||||    
T  23117284 caatttccaatacatttaatacataatttttcattaaaaacttactatttaaa 23117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 15720063 - 15720170
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||| ||| || ||||||| |  |||||||||||||||||     ||||| ||||||| |||| | ||||||||||||||||||| || ||||||| |    
T  15720063 actcttcaagcataccaaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttacta 15720162  T
Q  275 tttaaagt 282  Q
     |||||||    
T  15720163 attaaagt 15720170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 8221179 - 8221241
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgctcc 298  Q
    |||||||| ||||||||| |||| ||||||||||||| ||||||| | |||||| | ||||||    
T  8221179 aatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaagaatgctcc 8221241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 41048036 - 41048096
Alignment:
Q  229 aatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||| |||||||| ||| ||||  |||||||||||||||  |||||| |||||||||||    
T  41048036 aatttccaatgcattaaatgcacactttttcattaaaaactacccattttaagtacttaaa 41048096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 2864139 - 2864261
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 275  Q
    |||||||||  |||||| ||| || ||||||||||| ||||    |||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||    
T  2864139 actctttaaacatcccatatttaggaattattctttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactat 2864238  T
Q  276 ttaaagtacttaaatagtgctcc 298  Q
    ||||||| |||||| ||||||||    
T  2864239 ttaaagtgcttaaagagtgctcc 2864261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 31889203 - 31889279
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaac-ttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||    
T  31889203 aactattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaagagtgc 31889279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 47187931 - 47187824
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| ||||||||||| ||||||||     |||||  |||||| |||||||| |||||| || ||||||||||||||||||||    
T  47187931 actctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttacca 47187832  T
Q  275 tttaaagt 282  Q
    ||| ||||    
T  47187831 ttttaagt 47187824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 43397080 - 43397018
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  43397080 aactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagt 43397018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 44829272 - 44829386
Alignment:
Q  184 tttaagaatcccaaattaagtaattattcttttaaaa-----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 278  Q
    |||||| |||||||||| |||||||||||||| ||||     |||||| |||||| |||| |||| |||||||||||||| ||| ||||||||||  |||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttatt-aaaacttaccgatta 44829370  T
Q  279 aagtacttaaatagtg 294  Q
    ||||||||||| ||||    
T  44829371 aagtacttaaagagtg 44829386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 39150578 - 39150698
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||| ||||||||||||| ||||||     ||||| ||||||  |||||||| |||||| || |||||||||||| ||||| |    
T  39150578 actctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttacta 39150677  T
Q  275 tttaaagtacttaaatagtgc 295  Q
     ||||||| |||||| |||||    
T  39150678 gttaaagtgcttaaagagtgc 39150698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 48022464 - 48022358
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||     ||||||||||||  |||||||| |||||| |  |||| |||||||||||||     
T  48022464 tactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaatacatatttttttattaaaaacttact 48022365  T
Q  274 atttaaa 280  Q
    |||||||    
T  48022364 atttaaa 48022358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 38748832 - 38748711
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||| || ||||||| || |||||||||||||||||     |||||  |||||  |||||| | ||||||||||||||||| || |||||||     
T  38748832 tactctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttact 38748733  T
Q  274 atttaaagtacttaaatagtgc 295  Q
    | ||||||| |||||| |||||    
T  38748732 aattaaagtgcttaaagagtgc 38748711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 38491217 - 38491309
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaa 267  Q
    ||||||| ||||||||||||| |||||||||| | |||||||     ||||| ||||||  |||||||| ||||||||| |||||||||||||    
T  38491217 actctttcagaatcccaaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 34409784 - 34409836
Alignment:
Q  229 aatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagt 282  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||||||    
T  34409784 aatttccaatgcattcaatacacat-ttttcattaaaaacttaccatttaaagt 34409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 32562463 - 32562357
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    ||||||||||||||  ||||| |||||||||| |||||||     ||||||| ||||||  |||||| | ||||||||| |||| | ||||||||||| |    
T  32562463 actctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaatttttta-taaaaacttacta 32562365  T
Q  275 tttaaagt 282  Q
    ||||||||    
T  32562364 tttaaagt 32562357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 8794411 - 8794453
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa 221  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  8794411 tactctttaagcatcctaaatttagtaattattcttttaaaaa 8794453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 2995081 - 2995040
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa 221  Q
    ||||||||||||||| ||||| |||||||||| |||||||||    
T  2995081 actctttaagaatccaaaatttagtaattattattttaaaaa 2995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 4851310 - 4851241
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||||| ||||||| |||||| ||| ||| ||||||||||| || ||||||| | ||||||| ||||||    
T  4851310 aactattacaatttcaaatgcacttactacccaacttttcataaagaacttactaattaaagtgcttaaa 4851241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 17552874 - 17552943
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||  ||||| ||||| |||||||| |||| ||||  ||||||||| ||| |||||||||||||||    
T  17552874 aactattataatttttaatgtatttaatatacaattttttgttaaaaactgaccttttaaagtacttaaa 17552943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 33791850 - 33791809
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaa 220  Q
    ||||||||||| || | |||||||||||||||||||||||||    
T  33791850 tactctttaagtatgctaaattaagtaattattcttttaaaa 33791809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 39973888 - 39973928
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa 220  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  39973888 actctttaagcatgctaaattaagtaattattcttttaaaa 39973928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 42573879 - 42573839
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaa 220  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  42573879 actctttaagcatgctaaattaagtaattattcttttaaaa 42573839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 1334994 - 1334871
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||||||||| | |||||||||||| |||||     ||||| ||||||| |||||||| |||| |||| ||||||||||||||||| ||    
T  1334994 actctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatca 1334895  T
Q  275 tttaaagtacttaaatagtgctcc 298  Q
    |||||||| |||||| ||||||||    
T  1334894 tttaaagtgcttaaagagtgctcc 1334871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 19890300 - 19890185
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    |||| |||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||| ||||||||||||||||||||||||||||||||||||      
T  19890300 tactatttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttatt 19890201  T
Q  274 atttaaagtacttaaa 289  Q
    |||| |||| ||||||    
T  19890200 attttaagtgcttaaa 19890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 34904898 - 34904775
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| ||| || ||| ||||||||||||||||||     ||||||| |||||| ||||| |||||||||| || |||||||||| ||||||| |    
T  34904898 actctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaa 34904799  T
Q  275 tttaaagtacttaaatagtgctcc 298  Q
    |||||||| |||||| ||||||||    
T  34904798 tttaaagtgcttaaagagtgctcc 34904775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 9449063 - 9448944
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 275  Q
    |||||||||| | | |||||| ||||||||||||||||||||    |||||  |||||  ||| |||| |||||||||||||||||||||||||||||||    
T  9449063 actctttaagcaactcaaatttagtaattattcttttaaaaatcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccat 9448964  T
Q  276 ttaaagtacttaaatagtgc 295  Q
    |||||||  ||||| |||||    
T  9448963 ttaaagtgtttaaagagtgc 9448944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 31017419 - 31017304
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||| |     |||  |||||  |||||||||||||||||||||||||||||||||||  |    
T  31017419 tactcttcaagtatcccaaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttc 31017320  T
Q  274 atttaaagtacttaaa 289  Q
    ||||||||| ||||||    
T  31017319 atttaaagtgcttaaa 31017304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 31452454 - 31452341
Alignment:
Q  182 tctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 276  Q
    |||||||  ||||||| || |||||||||||||||||||| |     ||| ||||||  |||||||| |||||||||||||| ||||||||||||| |||    
T  31452454 tctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatt 31452356  T
Q  277 taaagtacttaaata 291  Q
    |||||| ||||||||    
T  31452355 taaagtgcttaaata 31452341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 14295626 - 14295707
Alignment:
Q  182 tctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaactttt 258  Q
    ||||||||||||||||||| ||||||||||||||||||     ||||||| ||||||  |||||||| ||||||||||||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttt 14295707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 38533975 - 38533877
Alignment:
Q  183 ctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 277  Q
    ||||||| ||| |||||| |||||||||| |||||||     |||||||| ||||||||||||||| ||||||||| ||||| ||| |||||||| ||||    
T  38533975 ctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaacttactattt 38533877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 33074930 - 33074870
Alignment:
Q  228 caatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||||||||| |||| |||||||||||||| | ||||||||||  ||||||||||||||||    
T  33074930 caatttctaatacattaaatacacaactttt-aataaaaacttataatttaaagtacttaaa 33074870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 20064907 - 20065022
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| |||| ||||  ||||||||||||||||||     ||||||| ||||||  |||| ||| ||||||||| |||||| ||||| ||| | |    
T  20064907 actctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatacacaatttttca-taaaacctttcta 20065005  T
Q  275 tttaaagtacttaaata 291  Q
    |||||||| ||||||||    
T  20065006 tttaaagtgcttaaata 20065022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 38533411 - 38533354
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 277  Q
    |||||||| ||||||||||||||| ||||||||| ||||| ||| ||| |||| ||||    
T  38533411 aactattgtaatttctaatgcattcaatacacaatttttctttacaaaattactattt 38533354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 37993119 - 37993179
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 280  Q
    ||||||| ||||||  ||||||||||||||| || |||| |||||||| |||| |||||||    
T  37993119 aactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaa 37993179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 29083988 - 29083895
Alignment:
Q  202 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca-tttaaagtacttaaa 289  Q
    ||||||||||||||||||||     ||||| |||||| |||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||    
T  29083988 agtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaaa 29083895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 42846116 - 42846012
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaat-gcatttaatacacaacttttcattaaaaacttacc 273  Q
    |||||||||| |||| ||||| |||||||||||||| |||||     ||||| ||||||  ||| ||||| ||||||||||||||||||||||||||| |    
T  42846116 actctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaacttatc 42846017  T
Q  274 attta 278  Q
    |||||    
T  42846016 attta 42846012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 51351327 - 51351392
Alignment:
Q  229 aatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||  |||||||| |||||| ||||    
T  51351327 aatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaagagtg 51351392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 40673475 - 40673543
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaa 288  Q
    ||||||| |||||||||||  ||| ||||||| ||||||| ||||||||||| |||||||||| |||||    
T  40673475 aactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 49362453 - 49362368
Alignment:
Q  191 atcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 271  Q
    |||||||||| | ||||||||||||||||||     ||||| ||||||| |||| |||||||| |||| |||| ||||||||||||    
T  49362453 atcccaaatttaataattattcttttaaaaagttaactattacaatttccaatgtatttaatatacaattttttattaaaaactta 49362368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 12086810 - 12086754
Alignment:
Q  238 tgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||||| ||||||||  |||||||||||||||||| ||||  |||||||||||||||    
T  12086810 tgcattcaatacacattttttcattaaaaacttactatttcgagtacttaaatagtg 12086754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 42939873 - 42939925
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 272  Q
    ||||||||||||||  |||| ||||||||||||| |||||||| |||||||||    
T  42939873 aactattgcaattttcaatgaatttaatacacaatttttcatttaaaacttac 42939925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 52638268 - 52638173
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 271  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||||| | ||||||||| |||| | ||||||||||    
T  52638268 actctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtgaatacacaatttttta-taaaaactta 52638173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 26143164 - 26143199
Alignment:
Q  245 aatacacaacttttcattaaaaacttaccatttaaa 280  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26143164 aatacacaaattttcattaaaaacttaccatttaaa 26143199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 26900088 - 26900013
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    ||||||| ||||||  |||||||||| |||| ||||||||||  |||| ||||||||||||||  ||||| |||||    
T  26900088 aactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaagagtgc 26900013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 48180281 - 48180174
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 274  Q
    |||||||||| ||||| |||| |  |||||||||||||||     ||||||| ||||||| ||||||||   ||| |||| |||||| |||||||||| |    
T  48180281 actctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttacta 48180182  T
Q  275 tttaaagt 282  Q
    ||||||||    
T  48180181 tttaaagt 48180174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 20313 - 20240
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |||||||||| |||||||||| |||||| ||||    
T  20313 aactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaagtgcttaaagagtg 20240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 1841003 - 1841084
Alignment:
Q  204 taattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 280  Q
    ||||||||||||||||||     ||||| ||||||| |||||||| |||||||||||||| |||||||||||| ||||||||    
T  1841003 taattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaaa 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 31855095 - 31855164
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    ||||||| ||||||| |||||||| |||| |||| |||||||||||||||||| ||||||||| ||||||    
T  31855095 aactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaa 31855164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 17215777 - 17215674
Alignment:
Q  196 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaat 290  Q
    ||||| |||||||||| |||||||||     ||||| ||||||  |||||||| |||| |||| |||| ||||||||||||||||||||||| ||||||     
T  17215777 aaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaag 17215678  T
Q  291 agtg 294  Q
    ||||    
T  17215677 agtg 17215674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 32823721 - 32823796
Alignment:
Q  223 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgctcc 298  Q
    |||| ||||||  |||||||| ||||||||||||||||||||||||||   ||||||||| |||||| ||||||||    
T  32823721 tattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctcc 32823796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 2692540 - 2692449
Alignment:
Q  180 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaa 266  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||| | | |||||||||||||| |||||||    
T  2692540 actctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttttattaaaa 2692449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 30801798 - 30801851
Alignment:
Q  236 aatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 289  Q
    |||||||| |||||||||||||| ||||||||||| | ||||||||| ||||||    
T  30801798 aatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaa 30801851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 7421716 - 7421787
Alignment:
Q  223 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 294  Q
    |||| ||||||  ||||||||||||||||||||||| | |||||  |||| ||||||||| |||||| ||||    
T  7421716 tattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaagagtg 7421787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 9762852 - 9762919
Alignment:
Q  229 aatttctaatgcatttaatacacaacttttca-ttaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    |||||||||| |||| | |||||||||||||| ||||||| ||||||||||||||  ||||| |||||    
T  9762852 aatttctaatacattcagtacacaacttttcatttaaaaatttaccatttaaagtgattaaagagtgc 9762919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 24103843 - 24103780
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagta 283  Q
    ||||||| |||||| ||||| ||||||||||||| |||| |||||||| |||  ||||||||||    
T  24103843 aactattacaatttttaatgaatttaatacacaatttttaattaaaaatttattatttaaagta 24103780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 34232020 - 34231946
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgc 295  Q
    |||| |||||||||  |||| |||||||||||||||||||||||| |||||  |||||||||  |||||| |||||    
T  34232020 aactgttgcaattttcaatgtatttaatacacaacttttcattaagaactt-tcatttaaagggcttaaagagtgc 34231946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 2864917 - 2864978
Alignment:
Q  220 aactattgcaatttctaatgcatttaatacacaacttttcattaaaa-acttaccatttaaa 280  Q
    ||||||| ||||||  |||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  2864917 aactattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaa 2864978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 30739650 - 30739719
Alignment:
Q  230 atttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgctcca 299  Q
    ||||| |||||||| ||||||||| ||||||||||||| ||| ||||| || | |||||| |||| ||||    
T  30739650 atttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaaaaagtggtcca 30739719  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 62636 - 62521
Alignment:
Q  179 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 273  Q
    ||||||||||| ||| || ||| ||||||||||||||||||||     ||||| | ||||  |||||||| |||||| || |||| |||||||||||||     
T  62636 tactctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttact 62537  T
Q  274 atttaaagtacttaaa 289  Q
    ||||||||| ||||||    
T  62536 atttaaagtgcttaaa 62521  T

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