View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18102_low_7 (Length: 306)
Name: NF18102_low_7
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18102_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 29449022 - 29449291
Alignment:
| Q |
1 |
aggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgcccnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29449022 |
aggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgcccttttttt- |
29449120 |
T |
|
| Q |
101 |
aatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgtagactttgaatgccatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29449121 |
aatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttatgctgtagactttgaatgccatcc |
29449220 |
T |
|
| Q |
201 |
ctttgtgcccaaggttgttttatagatccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacat |
290 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29449221 |
ctttgtgc-------------------ccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacat |
29449291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 29457080 - 29457149
Alignment:
| Q |
114 |
atattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgta |
183 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
29457080 |
atattttttctacaaggtatgttttatgttgtaatatcataatgtggactattattccttttctgctgta |
29457149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 29456984 - 29457031
Alignment:
| Q |
41 |
aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac |
88 |
Q |
| |
|
|||| |||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29456984 |
aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac |
29457031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 29461783 - 29461834
Alignment:
| Q |
184 |
gactttgaatgccatccctttgtgcccaaggttgttttatagatccaacagaa |
236 |
Q |
| |
|
|||||||| |||||| |||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
29461783 |
gactttgactgccattcctt-gtgcctaaggttgttttatagatccaatagaa |
29461834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University