View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18102_low_8 (Length: 304)
Name: NF18102_low_8
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18102_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 7224395 - 7224139
Alignment:
| Q |
40 |
ggagtaattttattccatcttttttatgaaaatgtcgtaaaattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatat |
139 |
Q |
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| T |
7224395 |
ggagtaattttattccatcttttttatgaaaatgtcgtaaaattcccaagttaaggaatattttgtttaatacagggacaatggtgctgagaaggaatat |
7224296 |
T |
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| Q |
140 |
cttgtgaagtggagagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttc |
239 |
Q |
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| T |
7224295 |
cttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttg |
7224196 |
T |
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| Q |
240 |
gttctaggtctaggaagatttcttatagtaagcnnnnnnncagtgttagtgatgatg |
296 |
Q |
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| T |
7224195 |
gttctaggtctaggaagatttcttatagtaagcaaaaaaacagtgttagtgatgatg |
7224139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 2918878 - 2918623
Alignment:
| Q |
40 |
ggagtaattttattccatcttttttatgaaaatgtcgtaaaattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatat |
139 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2918878 |
ggagtaattttattccatcttttctatgaaaatgtcataaa-ttcccaagttatggaatattttgtttaatacagggaccatggtgctgagaaggaatat |
2918780 |
T |
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| Q |
140 |
cttgtgaagtggagagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttc |
239 |
Q |
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| T |
2918779 |
cttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttc |
2918680 |
T |
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| Q |
240 |
gttctaggtctaggaagatttcttatagtaagcnnnnnnncagtgttagtgatgatg |
296 |
Q |
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| T |
2918679 |
gttctaggtctaggaagatttcttattgtaagcaaaaaggcagtgttagtgatgatg |
2918623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 49037919 - 49038038
Alignment:
| Q |
127 |
tgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagaga |
226 |
Q |
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||||| ||||||||| |||||||||| ||||||||| ||||||||||| ||||||| |||||| ||||| ||| | ||| || | |||||||| ||| |
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| T |
49037919 |
tgagagggaatatctggtgaagtggaaagagcttccatatgatgaatgttattgggaatctgagtctgatatttctgcatttcagccggaaatagaaaga |
49038018 |
T |
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| Q |
227 |
ttcaatatatttcgttctag |
246 |
Q |
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|| |||| |||||||||||| |
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| T |
49038019 |
tttaatagatttcgttctag |
49038038 |
T |
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