View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18102_low_9 (Length: 264)
Name: NF18102_low_9
Description: NF18102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18102_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 4383186 - 4383429
Alignment:
| Q |
4 |
gtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactggatgattcctgcaaacaattaacaaagaattacaaaccaatcatgtca |
103 |
Q |
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| T |
4383186 |
gtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaatcacaaaccaatcatgtca |
4383285 |
T |
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| Q |
104 |
aggttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatcttaactgctacaaaacaaacgcaacgcaaaatgcaagaataga |
203 |
Q |
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| T |
4383286 |
atgttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatgttaactgctacaaaacaaacgcaacgcaaaatgcaagtataga |
4383385 |
T |
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| Q |
204 |
ggttatttttatacaaatactcttctatcatcactagtaatcgt |
247 |
Q |
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| T |
4383386 |
ggttatttttatacaaatacttttctatcctcactagtaatcgt |
4383429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4111620 - 4111371
Alignment:
| Q |
1 |
attgtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactggatgattcctgcaaacaattaacaaagaattacaaaccaatcatg |
100 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4111620 |
attgtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaatcacaaaccaatcatg |
4111521 |
T |
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| Q |
101 |
tcaaggttcttctacatatcccacccttgcataacttctcaaaaatagtatag-----cataatcttaactgctacaaaacaaacgcaacgcaaaatgca |
195 |
Q |
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| T |
4111520 |
tcaatgttcttctacatatcccacccttgcataacttctcaaaaatagtatagcaaaacaaaatactaactgctacaaaacaaacagcacacaaaatgca |
4111421 |
T |
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| Q |
196 |
agaatagaggttatttttatacaaatactcttctatcatcactagtaatc |
245 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
4111420 |
agaatagaggttatttttatacaattacttttctatcctcactagtaatc |
4111371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4768358 - 4768601
Alignment:
| Q |
1 |
attgtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactggatgattcctgcaaacaattaacaaagaattacaaaccaatcatg |
100 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
4768358 |
attgtgtcttccaagtttgcctcctgtgcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaccaaagaatcacaaaccaatcatg |
4768457 |
T |
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| Q |
101 |
tcaaggttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatcttaactgctacaaaacaaacgcaacgcaaaatgcaagaat |
200 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||| || |
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| T |
4768458 |
tcaagtttcttctacatat-ccacccttgcataacttctaaaaaatagtatagcaaaatgctaactgctacaaaacaaacagcacacaaaatgcaattat |
4768556 |
T |
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| Q |
201 |
agaggttatttttatacaaatactcttctatcatcactagtaatc |
245 |
Q |
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||||||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
4768557 |
agaggttatttttatacaattacttttctatcctcactagtaatc |
4768601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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