View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_high_15 (Length: 330)
Name: NF18103_high_15
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 42824934 - 42824615
Alignment:
| Q |
1 |
gaacctctaaactgttcaatcttctccctcaactcaacaagcggcgcccgcatccgcaccaccgccgcatccacatcaacaagcttcgtactcaaattaa |
100 |
Q |
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| T |
42824934 |
gaacctctaaactgttcaatcttctccctcaactcaacaagcggcgcccgcatccgcaccaccgccgcatccacatcaacaagcttcgtactcaaattaa |
42824835 |
T |
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| Q |
101 |
cgaaatcagcataatcgcgattgattagatcaatgagctcgtgatttagcgacgagagatagttgttgagttccgatcggagagtgtcgaatgggacgaa |
200 |
Q |
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| T |
42824834 |
cgaaatcagcataatcgcgattgattagatcaatgagctcgtgatttagcgacgagagatagttgttgagttccgatcggagagtgtcgaatgggacgaa |
42824735 |
T |
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| Q |
201 |
ggttcggagttcggaaatgtaggattcggaatcgaagtcaggggagaggaaggaggtaggtttgaaccagagaggatgggagtcgagtgggtcggagaag |
300 |
Q |
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| T |
42824734 |
ggttcggagttcggaaatgtaggattcggaatcgaagtcaggggagaggaaggaggtaggtttgaaccagagaggatgggagtcgagtgggtcggagaag |
42824635 |
T |
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| Q |
301 |
aggtttgtggtggatctgtg |
320 |
Q |
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| T |
42824634 |
aggtttgtggtggatctgtg |
42824615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 48411586 - 48411741
Alignment:
| Q |
96 |
attaacgaaatcagcataatcgcgattgattagatcaatgagctcgtgatttagcgacgagagatagttgttgagttccgatcggagagtgtcgaatggg |
195 |
Q |
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|||| ||||||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||||||||||| || |||||||||| ||| || |
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| T |
48411586 |
attagcgaaatcagagtaatcgcgattgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaaggga |
48411685 |
T |
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| Q |
196 |
acgaaggttcggagttcggaaatgtaggattcggaatcgaagtcaggggagaggaa |
251 |
Q |
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| T |
48411686 |
acgaaggttggaagttgagagatgtatgattcggaatcgaagttaggggagaggaa |
48411741 |
T |
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