View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_high_17 (Length: 321)
Name: NF18103_high_17
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 861593 - 861902
Alignment:
| Q |
9 |
agcatagggcatatgagtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagca |
108 |
Q |
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| T |
861593 |
agcagagggcatatgagtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagca |
861692 |
T |
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| Q |
109 |
gaaatgtagataccaagggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagag |
208 |
Q |
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| T |
861693 |
gaaatgtagataccaagggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagag |
861792 |
T |
|
| Q |
209 |
tcagcaatatagcaataataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagtttt |
308 |
Q |
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| T |
861793 |
tcagcaatatagcaataataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagtttt |
861892 |
T |
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| Q |
309 |
gatgatgtcc |
318 |
Q |
| |
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|||||||||| |
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| T |
861893 |
gatgatgtcc |
861902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 1222870 - 1223179
Alignment:
| Q |
9 |
agcatagggcatatgagtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagca |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1222870 |
agcagagggcatatgagtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagca |
1222969 |
T |
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| Q |
109 |
gaaatgtagataccaagggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1222970 |
gaaatgtagataccaagggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagag |
1223069 |
T |
|
| Q |
209 |
tcagcaatatagcaataataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagtttt |
308 |
Q |
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| T |
1223070 |
tcagcaatatagcaataataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagtttt |
1223169 |
T |
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| Q |
309 |
gatgatgtcc |
318 |
Q |
| |
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|||||||||| |
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| T |
1223170 |
gatgatgtcc |
1223179 |
T |
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