View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_high_2 (Length: 487)
Name: NF18103_high_2
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 39789767 - 39790233
Alignment:
| Q |
1 |
tcatcatcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggtttagaagagtt |
100 |
Q |
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| T |
39789767 |
tcatcatcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagacaaaacaaagggtttagaagagtt |
39789866 |
T |
|
| Q |
101 |
caatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttcttctaagaggtattcag |
200 |
Q |
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| T |
39789867 |
caatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttcttctaagaggtattcag |
39789966 |
T |
|
| Q |
201 |
ctagacaacaaagaggttttgcacttgagaccattccatctttctctctttctaagcgaaccggcttgcgtgaagaagaggaagatgtggaagaaagtga |
300 |
Q |
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| T |
39789967 |
ctagacaacaaagaggttttgcacttgagaccattccatctttctctctttctaagcgaaccggcttgcgtgaagaagaggaagatgtggaagaaagtga |
39790066 |
T |
|
| Q |
301 |
tattgaagatgaagaaagctatgatgagttcagtgtgatgaatagaatgatgcagagtgaagaagtggatagagtttgcagggtgagttttgatgaggag |
400 |
Q |
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| T |
39790067 |
tattgaagatgaagaaggctatgatgagttcagtgtgatgaatagaatgatgcagagtgaagaagtggatagagtttgcagggtgagttttgatgaggag |
39790166 |
T |
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| Q |
401 |
ggagagtttggtgataatgagatgtatcttgcaaagggacttggtgttgatttctgtggtgatgatg |
467 |
Q |
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| T |
39790167 |
ggagagtttggtgataatgagatgtatcttgcaaagggacttggtgttgatttctgtggtggtgatg |
39790233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 39411978 - 39411722
Alignment:
| Q |
5 |
catcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggt---ttagaagagttc |
101 |
Q |
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||||||||| ||||||||| ||||||||||| ||||||||||||||| || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
39411978 |
catcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccatttctgatcttgaaagacaaaacaaagggttgattagaagagttc |
39411879 |
T |
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| Q |
102 |
aatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttcttctaagaggtattcagc |
201 |
Q |
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| T |
39411878 |
aatctgaagggaacttggaagacttagcctatgccactaattgtaacaaca------------------atatggactcttcttctaaaaggtattcagt |
39411797 |
T |
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| Q |
202 |
tagacaacaaagaggttttgcacttgagaccattccatctttctctctttctaagcgaaccggcttgcgtgaagaaga |
279 |
Q |
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| T |
39411796 |
gag---acaaagaggcttcgcactagagaccattccatctttctctctttcaaagcaaacaggcttgcgtgaagaaga |
39411722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 451
Target Start/End: Complemental strand, 39411631 - 39411547
Alignment:
| Q |
367 |
ggatagagtttgcagggtgagttttgatgaggagggagagtttggtgataatgagatgtatcttgcaaagggacttggtgttgat |
451 |
Q |
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| T |
39411631 |
ggatagagttttcagggtgagttttggtgaggagggaaaggttggtaataaagaaatgtatcttgcaaagggacttggtgttgat |
39411547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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