View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18103_high_22 (Length: 306)

Name: NF18103_high_22
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18103_high_22
NF18103_high_22
[»] chr7 (5 HSPs)
chr7 (10-306)||(27601864-27602160)
chr7 (157-213)||(45201675-45201731)
chr7 (157-210)||(22819756-22819809)
chr7 (122-183)||(2820736-2820797)
chr7 (157-221)||(23826552-23826616)
[»] chr3 (4 HSPs)
chr3 (10-254)||(28308391-28308634)
chr3 (157-217)||(24572050-24572110)
chr3 (144-210)||(44887939-44888005)
chr3 (162-212)||(40413698-40413748)
[»] chr5 (6 HSPs)
chr5 (102-254)||(21745116-21745268)
chr5 (66-237)||(42740935-42741106)
chr5 (14-74)||(21744376-21744436)
chr5 (169-221)||(19837702-19837754)
chr5 (14-74)||(42740136-42740196)
chr5 (173-201)||(6264246-6264274)
[»] chr1 (4 HSPs)
chr1 (157-210)||(22191820-22191873)
chr1 (157-210)||(3073804-3073857)
chr1 (139-205)||(6458469-6458535)
chr1 (157-210)||(21404886-21404939)
[»] chr2 (4 HSPs)
chr2 (139-211)||(21566583-21566655)
chr2 (157-203)||(39073191-39073237)
chr2 (179-219)||(15143633-15143673)
chr2 (173-209)||(32191525-32191561)
[»] chr4 (2 HSPs)
chr4 (111-205)||(39936878-39936972)
chr4 (164-209)||(9777436-9777481)
[»] chr6 (2 HSPs)
chr6 (107-221)||(333703-333817)
chr6 (142-214)||(28576484-28576556)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 27602160 - 27601864
Alignment:
Q  10 ccacagaggagcaaagcaagggcaagaaagaaccaaatgttagatagtcttaacacctccacatccggacacgcaaaactatgaatcgtgaaatataatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | |||||||||||||    
T  27602160 ccacagaggagcaaagcaagggcaagaaagaaccaaatgttagacagtcttgacacctccacatccggacacgcaaagctatgacttgtgaaatataatg 27602061  T
Q  110 tcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27602060 tcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaat 27601961  T
Q  210 ctgaagtagcattagagttatgcacctcctaagtagacaacaactaatcacaccccaaatcgaataaccaacggtaggatcaggcctccattaccaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27601960 ctgaagtagcattagagttatgcacctcctaagtagacaacaactaatcacaccccaaatcgaataaccaacggtaggatcagacctccattaccaa 27601864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 45201675 - 45201731
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctga 213  Q
    |||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  45201675 tctccatgcaagaatagaaaccttcaagaaaatctgtttgtgcaaaattaaatctga 45201731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 22819809 - 22819756
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatc 210  Q
    |||||| |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  22819809 tctccacgcaaaaatagataccttcaagggaacctgtttatgccaaattaaatc 22819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 2820797 - 2820736
Alignment:
Q  122 aaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaa 183  Q
    ||||||||| |||| | ||||| ||||||||||| ||| ||| ||| |||||||||||||||    
T  2820797 aaattatcctttgatggcaaccaatttcgaagaagtcttcaaacaaaaatagaaaccttcaa 2820736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 23826616 - 23826552
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcat 221  Q
    ||||||||| | ||| |||||||||||||||||||| || |||||||| || | || ||||||||    
T  23826616 tctccaagccaaaatcgaaaccttcaaggaaacctgcttatgccaaatgaagtatgtagtagcat 23826552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 28308391 - 28308634
Alignment:
Q  10 ccacagaggagcaaagcaagggcaagaaagaaccaaatgttagatagtcttaacacctccacatccggacacgcaaaactatgaatcgtgaaatataatg 109  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||  | ||| | || | ||||||||    
T  28308391 ccacataggagcaaagcaagggcaagaaagaaccaaatgctggatagtctcgacacctccacatccggacacgcaaagttgtgacttgt-agatataatg 28308489  T
Q  110 tcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaat 209  Q
    || || ||||| ||||||||| |||||  ||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||| |||    
T  28308490 tcacgtgccaccaaattatcctttgacagcaacctattccgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaat 28308589  T
Q  210 ctgaagtagcattagagttatgcacctcctaagtagacaacaact 254  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
T  28308590 ctgaagtagcattagagttatacatctcctgagtagacaacaact 28308634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 24572110 - 24572050
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagta 217  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  24572110 tctccaaacaaaaatagaaaccttcaaagaaacatgtttgtgccacattaaatctgtagta 24572050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 44887939 - 44888005
Alignment:
Q  144 tatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatc 210  Q
    ||||||| || | |||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||    
T  44887939 tatttcgtaggagtctccatgcaagaatagacaccttcaaaggaacctgtttatgccaaattaaatc 44888005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 40413748 - 40413698
Alignment:
Q  162 aagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctg 212  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||| |||||||    
T  40413748 aagcaaaaattgaaacattcaaggaaacctgtttatgccaaataaaatctg 40413698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 21745116 - 21745268
Alignment:
Q  102 atataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgcca 201  Q
    |||||||| ||| |||||  ||||||||| ||||| ||||||||||| |||||| ||||||| | || |||||||| |||  | |||| |||||||||||    
T  21745116 atataatgccgcacgccatcaaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaactttcttgaaaacatgtttgtgcca 21745215  T
Q  202 aattaaatctgaagtagcattagagttatgcacctcctaagtagacaacaact 254  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||| |||||    
T  21745216 aattaaatctgaagtagcattaaagttatgcacctcctaggtaaacatcaact 21745268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 42740935 - 42741106
Alignment:
Q  66 ctccacatccggacacgcaaaactatgaatcgtgaaatataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagc 165  Q
    ||||||||| ||||| |||||  | ||| || ||||| ||||||  || ||||| |||||||||| |||||  ||||||||||||||||| ||| |||||    
T  42740935 ctccacatctggacatgcaaagttgtgactcatgaaacataatgctgcacgccattaaattatcctttgacagcaacctatttcgaagaagtcttcaagc 42741034  T
Q  166 aagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcattagagttatgcacctc 237  Q
     || |||||||| |||  | |||| |||||||||||||||||||||||| |||||||| |||||||| ||||    
T  42741035 tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaaatagcattaaagttatgctcctc 42741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 21744376 - 21744436
Alignment:
Q  14 agaggagcaaagcaagggcaagaaagaaccaaatgttagatagtcttaacacctccacatc 74  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||  |||||||||||||    
T  21744376 agaggagcaaagcaagggtaagaaagaaccaaatgttggatagactcgacacctccacatc 21744436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 19837702 - 19837754
Alignment:
Q  169 aatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcat 221  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||| ||||    
T  19837702 aatagataccttcagagaaacctgtttgtgccaaattaaatctgaagttgcat 19837754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 42740136 - 42740196
Alignment:
Q  14 agaggagcaaagcaagggcaagaaagaaccaaatgttagatagtcttaacacctccacatc 74  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |  |||||||||||||    
T  42740136 agaggagcaaagcaagggcaagaaagaatcaaatgttggatagattcgacacctccacatc 42740196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 6264274 - 6264246
Alignment:
Q  173 gaaaccttcaaggaaacctgtttgtgcca 201  Q
    |||||||||||||||||||||||||||||    
T  6264274 gaaaccttcaaggaaacctgtttgtgcca 6264246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 22191873 - 22191820
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatc 210  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  22191873 tctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaaatc 22191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 3073804 - 3073857
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatc 210  Q
    |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  3073804 tctccacgcaaaaatagagaccttcaagggaacctgtttgtgccaaattaaatc 3073857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 6458535 - 6458469
Alignment:
Q  139 caacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaatt 205  Q
    ||||||| | ||||||| ||| ||||||| |||||||||  |||||| |||||||||||||||||||    
T  6458535 caacctactccgaagaagtcttcaagcaaaaatagaaactgtcaagggaacctgtttgtgccaaatt 6458469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 21404886 - 21404939
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatc 210  Q
    |||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||    
T  21404886 tctccatgcaagaatagagaccttcaggggaacctgtttatgccaaattaaatc 21404939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 21566655 - 21566583
Alignment:
Q  139 caacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatct 211  Q
    ||||||||| ||||||||||| ||||||  |||| |||||||||||| |||||||||  ||||||||||||||    
T  21566655 caacctattccgaagaactcttcaagcagaaataaaaaccttcaagggaacctgtttaagccaaattaaatct 21566583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 39073191 - 39073237
Alignment:
Q  157 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaa 203  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||    
T  39073191 tctccaagcaagaatagacaccttcaagggaacctgcttgtgccaaa 39073237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 15143633 - 15143673
Alignment:
Q  179 ttcaaggaaacctgtttgtgccaaattaaatctgaagtagc 219  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  15143633 ttcaaagaaacctgtttgtgccaaatgaagtctgaagtagc 15143673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 32191525 - 32191561
Alignment:
Q  173 gaaaccttcaaggaaacctgtttgtgccaaattaaat 209  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  32191525 gaaaccttcaagggaacctgtttatgccaaattaaat 32191561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 39936972 - 39936878
Alignment:
Q  111 cgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaatt 205  Q
    |||||||||| || || ||| ||| || ||||||||| ||||||| ||||||||||| |||||||||||||| ||  |||| ||| |||||||||    
T  39936972 cgcgcgccaccaagttgtcctttgtcggcaacctattccgaagaagtctccaagcaaaaatagaaaccttcaggggtacctatttatgccaaatt 39936878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 9777436 - 9777481
Alignment:
Q  164 gcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaat 209  Q
    ||||||||||| |||||||||| |||| |||||||| |||||||||    
T  9777436 gcaagaatagagaccttcaagggaaccagtttgtgctaaattaaat 9777481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 333817 - 333703
Alignment:
Q  107 atgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaatta 206  Q
    |||||||||||||| || || ||| ||| ||  |||||||| ||||||| ||||||| ||| |||||||||||||| | ||| |||||| || ||||| |    
T  333817 atgtcgcgcgccaccaagttgtcctttgtcggaaacctattccgaagaagtctccaaacaaaaatagaaaccttcaggaaaatctgtttatgtcaaataa 333718  T
Q  207 aatctgaagtagcat 221  Q
     | ||||||| ||||    
T  333717 gaactgaagttgcat 333703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 28576556 - 28576484
Alignment:
Q  142 cctatttcgaagaactctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaa 214  Q
    |||||| |||| || ||||||| ||| |||||||||||||| ||  |||||||| |||||||| | |||||||    
T  28576556 cctattccgaaaaagtctccaaacaaaaatagaaaccttcaggggtacctgtttatgccaaataagatctgaa 28576484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University