View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_high_4 (Length: 445)
Name: NF18103_high_4
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 7934503 - 7934948
Alignment:
| Q |
1 |
gcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaa-tacataatattttgttcgttattctttcattccat |
99 |
Q |
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| T |
7934503 |
gcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttcattccat |
7934602 |
T |
|
| Q |
100 |
tgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagatt |
199 |
Q |
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| T |
7934603 |
tgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagatt |
7934702 |
T |
|
| Q |
200 |
aaaaaataataattggtcataagataccatttagtgactacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7934703 |
aaaaaataataattggtcataagataccatttagtgactacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagt |
7934802 |
T |
|
| Q |
300 |
ttgctttgttgggaacaatgtttatctccattacaaacaaatgtttcatcattatcttatttttcattgtcgtgtcttatgtacatccattatataaatg |
399 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7934803 |
ttgctttgttgggaacaatgtttgtctccattacaaacaaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatg |
7934902 |
T |
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| Q |
400 |
caatggcctt-gcataattgtccacactgataccctcccctatgat |
444 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
7934903 |
caatggccttcacataattgtccacactgataccctcccctttgat |
7934948 |
T |
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