View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_low_1 (Length: 814)
Name: NF18103_low_1
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 491 - 798
Target Start/End: Complemental strand, 39057497 - 39057190
Alignment:
| Q |
491 |
cagagaattcaggggaaacagaacacaatcatatgaagaacatgtttccgatgagtggcattacgatcgtaacagatcggattatagaaaagcatggaaa |
590 |
Q |
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| T |
39057497 |
cagagaattcaggggaaacagaacacaatcatatgaagaacatgtttccgatgagtggcattacgatcgtaacagatcggattatagaaaagcatggaaa |
39057398 |
T |
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| Q |
591 |
cgatgattacataaaacaaacatgaatgaattctgaaacggtgtttgcatcggttgaagagaatctgacgatgtttttgtgaaaaagttgagaactttgg |
690 |
Q |
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| T |
39057397 |
cgatgattacataaaacaaacatgaatgaattctgaaacagtgtttgcatcggttgaagagaatctgatgatgtttttgtgaaaaagtcgagaactttgg |
39057298 |
T |
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| Q |
691 |
atgaatgaaacaaagattgaaatgggtttttgatggattaacgttggagtgtgtgtggtgttttgttttgaagatgatgattaggaggaggaggttgaga |
790 |
Q |
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| T |
39057297 |
atgaatgaaacaaagattgaaatgggtttttgatggattaacgttggagtgtgtgtggtgttttgttttgaagatgatgattaggaggaggaggttgaga |
39057198 |
T |
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| Q |
791 |
gatagaag |
798 |
Q |
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| T |
39057197 |
gatagaag |
39057190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 39057984 - 39057650
Alignment:
| Q |
12 |
atcatcaccgatcgtttcaaaaaactatgattagatattagatgatgacccagatgaataaaacgcatgnnnnnnnnnnnnnnngtaaagtgtatttgaa |
111 |
Q |
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| T |
39057984 |
atcatcaccgatcgtttcaaaaaactatgattagatattagatgatgacccagatgaataaaaagcatgaaaaaacggaaaaaagtaaagggtatttgaa |
39057885 |
T |
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| Q |
112 |
gatgagtcaaaagatgaaaactttgaggagaagtatagtatttcattcttctaacgtgttggatattccnnnnnnngaaaggaatttttcaattatttgt |
211 |
Q |
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| T |
39057884 |
gatgagtcaaaagatgaaaactttgaggagaagtatagtatttcattcttctaacgtgttggatattccaaaaaaagaaaggaatttttcaattatttgt |
39057785 |
T |
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| Q |
212 |
gatcaaagttaaaaactttaatcacgtgaagtcaccgtgattcatcaaagtaacatcatcacagtaaaaatcataaatcaaaccagaaaattcatcctcc |
311 |
Q |
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| T |
39057784 |
gatcaaagttaaaaactttaatcacgtgaagtcatcgtgattcatcaaagtaacatcatcacagtaaaaatcataaatcaaaccagaaaattcatcctcc |
39057685 |
T |
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| Q |
312 |
attttcatggttgaacacccaaatacagaggattg |
346 |
Q |
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| T |
39057684 |
attttcatggttgaacacccaaaaacagaggattg |
39057650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 39057608 - 39057542
Alignment:
| Q |
388 |
agatcagagaattattattaagataattcattcaattcaacaagaacacttgctgaatacgcaacca |
454 |
Q |
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| T |
39057608 |
agatcagagaattataattaaggtaattcattcaattcaacaagaacacttgctgaatacgcaacca |
39057542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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