View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_low_2 (Length: 596)
Name: NF18103_low_2
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_low_2 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 67 - 581
Target Start/End: Original strand, 7499702 - 7500215
Alignment:
| Q |
67 |
ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagacttcagagc |
166 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7499702 |
ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtgc-atatataaacaattagatcagacttcagagc |
7499800 |
T |
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| Q |
167 |
cacagaaacttaagaactgttattgaagaataatttttcccattannnnnnnnctcagcagccgaaatagatcaaatatttttcagtcgtgtgaagtttt |
266 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7499801 |
cacagaaactttagaactgttattgaagaataatttttcccattattttttttcttagcagccgaaatagatcaaatatttttcagtcgtgtgaaatttt |
7499900 |
T |
|
| Q |
267 |
atttttatagtttggaaagatcacacatggagtttttgtattactatggcagcatatttcattagtaaataaaaactcctcaatagcagtataaactaga |
366 |
Q |
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| T |
7499901 |
atttttatagtttggaaagatcacacatggagtttttgtattactatggcagcatatttcattagcaaataaaaactcctcaatagcagtataaactaga |
7500000 |
T |
|
| Q |
367 |
tgtttcctttaatccatctatgataaagcatttgtctgacatgacaaaacaaatggttgaaggatcgttgatgaagcctcggaaagaaggcgcgccgctt |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7500001 |
tgtttcctttaatccatctatgataaagcatttgtctgacatgacaaaacaaatggttgaaggatcgttgatgaagcctcggaaagaaggcgcaccgctt |
7500100 |
T |
|
| Q |
467 |
cgtactcgttggctctacgacagaactacttataggagaatggttgaacctttagatattgctcaatactatctcaaatggtggtaaagactatgtgact |
566 |
Q |
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| T |
7500101 |
cgtactcgttggctctacgacagaactacttataggagaatggttgaaccttaagatattgctcaatactatctcaaatggtggtaaagactatgtgact |
7500200 |
T |
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| Q |
567 |
agagcaagatcaaga |
581 |
Q |
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||||||||||||||| |
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| T |
7500201 |
agagcaagatcaaga |
7500215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 8139134 - 8139017
Alignment:
| Q |
87 |
aaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaa-caattagatcagacttcagagccacagaaacttaagaactg |
185 |
Q |
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| T |
8139134 |
aaaactgagacataattccaaagtcagccatgtattaactgatagtgc-atacataaaacaattagatgaga-------gccacagaaactttagaactg |
8139043 |
T |
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| Q |
186 |
ttattgaagaataatttttcccatta |
211 |
Q |
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||| ||||||||||||||||||||| |
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| T |
8139042 |
ttacggaagaataatttttcccatta |
8139017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7488349 - 7488416
Alignment:
| Q |
1 |
catgagagaagggttacatagggtattgttttataaagaatcatgagactatggctatcagacatgtt |
68 |
Q |
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| T |
7488349 |
catgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactatcagacatgtt |
7488416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
| Q |
70 |
atgatcaagaaacataaaaaactgagacatc |
100 |
Q |
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| T |
8139198 |
atgatcaagaaacataaaaaactgagacatc |
8139168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 417 - 565
Target Start/End: Original strand, 2153245 - 2153392
Alignment:
| Q |
417 |
aaatggttgaaggatcgttgatgaagcctcggaaagaaggcgcgccgcttcgtactcgttggctctacgacagaactacttataggagaatggttgaacc |
516 |
Q |
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| T |
2153245 |
aaatggttcaagattcattgatgaagcctcagaaagaaggtgcgtcccttcgtacacgctggctctatggcggaacaacttacaggagaatggttgaacc |
2153344 |
T |
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| Q |
517 |
tttagatattgctcaatactatctcaaatggtggtaaagactatgtgac |
565 |
Q |
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| T |
2153345 |
attagaaatagctcaattctatctc-aatggtggtaaagactatgtgac |
2153392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Original strand, 2168554 - 2168603
Alignment:
| Q |
489 |
gaactacttataggagaatggttgaacctttagatattgctcaatactat |
538 |
Q |
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| T |
2168554 |
gaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2168603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Original strand, 2180187 - 2180236
Alignment:
| Q |
489 |
gaactacttataggagaatggttgaacctttagatattgctcaatactat |
538 |
Q |
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| T |
2180187 |
gaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2180236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 2207430 - 2207471
Alignment:
| Q |
496 |
ttataggagaatggttgaacctttagatattgctcaatacta |
537 |
Q |
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| T |
2207430 |
ttatagaagaatggttgaaccattagctattgctcaatacta |
2207471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 538
Target Start/End: Complemental strand, 2167 - 2094
Alignment:
| Q |
465 |
ttcgtactcgttggctctacgacagaactacttataggagaatggttgaacctttagatattgctcaatactat |
538 |
Q |
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| T |
2167 |
ttcgtactcgctggctcttcggtggaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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