View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18103_low_3 (Length: 447)
Name: NF18103_low_3
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18103_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 8335834 - 8335487
Alignment:
| Q |
17 |
tttcctccatagtaatcccttccatagggaggaaaattacacttggacatagtcaaaaggttgttattatttcctgtgtcaaagattgagtccccaaatg |
116 |
Q |
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| T |
8335834 |
tttcctccgtagtaatcccttccatagggaggaaaattacacttggacatagtcataaggttgttattatttcctgtgtcaaagattgagtccccaaatg |
8335735 |
T |
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| Q |
117 |
caaacactgctggaaatgctgctgcattcgtagtttgtgcaattgcaatattggatactttactgacaaataaaacaagaaaaattgtcaatctaaccca |
216 |
Q |
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| T |
8335734 |
caaacactgcaggaaatgctgctgcattcgtagtttgtgcaattgcaatatttgatactttactgccaaataaaacaataaaaattgtcaatctaaccca |
8335635 |
T |
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| Q |
217 |
cattaacttttccatcttactattagctttctgattttcttacaatatagtgtcaacaacattcaggtatttataggtactaagctatgtatgtatctag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8335634 |
cattaacttttccatcttactattagctttctgattttcttacaatatagtgtcaacaacattcaggtatttatagatactaagctat----gtatctag |
8335539 |
T |
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| Q |
317 |
tcataatttcacgtaatactgattaaattcttatccgccttaatttttaagg |
368 |
Q |
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| T |
8335538 |
tcataattacacgtaatactgattaaattcttatccgccttaatttttaagg |
8335487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 8335450 - 8335415
Alignment:
| Q |
405 |
cattataatattcatattagtcttcgagaattatct |
440 |
Q |
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| T |
8335450 |
cattataatattcatattagtcttcgagaataatct |
8335415 |
T |
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