View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18103_low_4 (Length: 396)

Name: NF18103_low_4
Description: NF18103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18103_low_4
NF18103_low_4
[»] chr2 (2 HSPs)
chr2 (1-379)||(6016953-6017331)
chr2 (314-379)||(36316392-36316457)
[»] chr8 (2 HSPs)
chr8 (315-378)||(11080140-11080203)
chr8 (319-378)||(5690727-5690786)
[»] chr5 (6 HSPs)
chr5 (316-379)||(35309255-35309318)
chr5 (316-378)||(41951841-41951903)
chr5 (314-379)||(31186097-31186162)
chr5 (316-378)||(15424629-15424689)
chr5 (314-361)||(35304799-35304846)
chr5 (338-378)||(41949443-41949483)
[»] chr7 (1 HSPs)
chr7 (314-370)||(7737275-7737331)
[»] chr4 (5 HSPs)
chr4 (316-379)||(35783689-35783752)
chr4 (316-378)||(13436543-13436605)
chr4 (314-379)||(5444686-5444751)
chr4 (316-377)||(27510594-27510655)
chr4 (313-379)||(5440790-5440856)
[»] chr1 (1 HSPs)
chr1 (316-371)||(41418053-41418108)
[»] chr6 (1 HSPs)
chr6 (316-354)||(23306795-23306833)
[»] chr3 (1 HSPs)
chr3 (314-378)||(4607403-4607465)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 6017331 - 6016953
Alignment:
Q  1 tccttgtttcacctatgtttctaaacgcggtgcggctaaacaatttcagaacagaaactcgctgtaaaaccgaagctgtgaattggagcttctagtttgt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017331 tccttgtttcacctatgtttctgaacgcggtgcggctaaacaatttcagaacagaaactcgctgtaaaaccgaagctgtgaattggagcttctagtttgt 6017232  T
Q  101 tttcatggtgaaaactttcaaggaatgcaagaaatggttggcaaaactagtttcaaacacatgcttaatgttcatttaattgtcttgttataaattgagg 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017231 tttcatggtgaaaactttcaaggaatgcgagaaatggttggcaaaactagtttcaaacacatgcttaatgttcatttaattgtcttgttataaattgagg 6017132  T
Q  201 gactatattactaattcataaaatttagagaccaatttggctgattgttacaaatttaaggatgcaattgctgattcacttccttcacgaccatcagcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6017131 gactatattactaattcataaaatttagagaccaatttggctgattgttacaaatttaaggatgcaattgcttattcacttccttcacgaccatcagcaa 6017032  T
Q  301 gcccttggcccccactattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017031 gcccttggcccccactactagagatatatgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 6016953  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 36316457 - 36316392
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||||| ||| |||||||||||||||||| |||| |  ||||||||||||||| |||||||    
T  36316457 actattagagatatatgttagatactagttagcactagttatatagtagtatatatagttgtaacc 36316392  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 11080140 - 11080203
Alignment:
Q  315 ctattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  11080140 ctattagagatatatgttagatactagttagcatttgtcaagtagtagtatatatagaagtaac 11080203  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 5690727 - 5690786
Alignment:
Q  319 tagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  5690727 tagagatatatgttagatactagttagcattagtgaagtagtagtatatatagttgtaac 5690786  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 35309318 - 35309255
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  35309318 tattagagatatatgttagatactaattagcattagtcaaatagtagtatatatagatgtaacc 35309255  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 41951903 - 41951841
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  41951903 tattagagatatatgttagatactagttagcattagtgaagtagtagtatatatagttgtaac 41951841  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 31186162 - 31186097
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||||| ||| |||||||||||||||||| |||| | |||||||||||||||| |||||||    
T  31186162 actattagagatatatgttagatactagttagcactagttatgtagtagtatatatagttgtaacc 31186097  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 15424689 - 15424629
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    |||| |||| ||| ||||||||||||||||  ||||| |||||||||||||||||| ||||||    
T  15424689 tattcgagatatatgttagatactagttag--ttagtgaagtagtagtatatatagttgtaac 15424629  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 35304846 - 35304799
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagta 361  Q
    |||||| |||| ||| |||| |||||||||||||||||||||||||||    
T  35304846 actatttgagatatatgttaaatactagttagcattagtcaagtagta 35304799  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 41949483 - 41949443
Alignment:
Q  338 ctagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    |||||| |||||||| |||||||||||||||||| ||||||    
T  41949483 ctagttggcattagtgaagtagtagtatatatagttgtaac 41949443  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 7737275 - 7737331
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagtagtatatata 370  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||    
T  7737275 actattagagatataggttagatactagttagtattagtcatgtagtagtatatata 7737331  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 35783689 - 35783752
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||| ||| |||||||| ||||||| |||||| |||||||||||||||||| |||||||    
T  35783689 tattagagatatatgttagatattagttagtattagttaagtagtagtatatatagttgtaacc 35783752  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 13436605 - 13436543
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    ||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  13436605 tattagagatatatgttagatactggttagcataagtgaagtagtagtatatatagttgtaac 13436543  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 5444686 - 5444751
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    ||||||||||| ||| |||||| | ||||||| |||||| |||||||||||||||||| |||||||    
T  5444686 actattagagatatatgttagagattagttagtattagttaagtagtagtatatatagttgtaacc 5444751  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 27510655 - 27510594
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaa 377  Q
    ||||||||| ||| |||||||||||||||| |||||||| |||||||| ||||||| |||||    
T  27510655 tattagagatataggttagatactagttagtattagtcatgtagtagtgtatatagttgtaa 27510594  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 5440790 - 5440856
Alignment:
Q  313 cactattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaacc 379  Q
    |||||||||||| ||| |||||| | ||||| | |||||| |||||||||||||||||| |||||||    
T  5440790 cactattagagatataggttagagattagttggtattagttaagtagtagtatatatagttgtaacc 5440856  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 41418053 - 41418108
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatag 371  Q
    ||||||||| ||| |||||||||||||||||| ||||||   ||||||||||||||    
T  41418053 tattagagatatatgttagatactagttagcactagtcataaagtagtatatatag 41418108  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 23306795 - 23306833
Alignment:
Q  316 tattagagaaatacgttagatactagttagcattagtca 354  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  23306795 tattagagatatatgttagatactagttagcattagtca 23306833  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 4607403 - 4607465
Alignment:
Q  314 actattagagaaatacgttagatactagttagcattagtcaagtagtagtatatatagatgtaac 378  Q
    |||||| |||| ||| |||||||||||| |||  ||||| |||||||||||||||||| ||||||    
T  4607403 actatttgagatatatgttagatactaggtag--ttagtgaagtagtagtatatatagttgtaac 4607465  T

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