View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18104_high_7 (Length: 265)

Name: NF18104_high_7
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18104_high_7
NF18104_high_7
[»] chr8 (18 HSPs)
chr8 (80-253)||(15067591-15067764)
chr8 (83-233)||(8114293-8114443)
chr8 (58-233)||(6530303-6530478)
chr8 (58-204)||(31313304-31313450)
chr8 (62-232)||(13948947-13949117)
chr8 (61-222)||(8867182-8867342)
chr8 (54-140)||(5493368-5493454)
chr8 (102-228)||(42685750-42685876)
chr8 (59-153)||(40505323-40505417)
chr8 (59-223)||(8768998-8769161)
chr8 (184-221)||(5959945-5959982)
chr8 (59-140)||(45244677-45244758)
chr8 (189-229)||(30875717-30875757)
chr8 (60-232)||(35865131-35865303)
chr8 (69-228)||(21372451-21372610)
chr8 (195-233)||(11258000-11258038)
chr8 (62-152)||(34576689-34576779)
chr8 (194-222)||(25186277-25186305)
[»] chr2 (21 HSPs)
chr2 (52-233)||(409889-410070)
chr2 (54-230)||(44068774-44068950)
chr2 (58-228)||(25626470-25626640)
chr2 (64-228)||(29877009-29877173)
chr2 (83-228)||(30549081-30549226)
chr2 (64-233)||(32294499-32294668)
chr2 (58-222)||(20061055-20061219)
chr2 (58-222)||(39420193-39420357)
chr2 (58-233)||(14275753-14275927)
chr2 (55-223)||(2889100-2889268)
chr2 (90-233)||(7743714-7743857)
chr2 (58-152)||(25626319-25626413)
chr2 (82-222)||(9950290-9950430)
chr2 (84-232)||(39364445-39364593)
chr2 (191-231)||(21620635-21620675)
chr2 (162-233)||(36278289-36278361)
chr2 (83-230)||(7061546-7061692)
chr2 (58-150)||(37230558-37230650)
chr2 (102-178)||(41890030-41890106)
chr2 (160-223)||(1705065-1705128)
chr2 (163-223)||(2641570-2641628)
[»] chr7 (20 HSPs)
chr7 (58-231)||(32786787-32786960)
chr7 (72-232)||(28337215-28337375)
chr7 (55-233)||(26080962-26081140)
chr7 (55-233)||(26104749-26104927)
chr7 (51-232)||(32546696-32546877)
chr7 (58-233)||(45837805-45837980)
chr7 (90-233)||(47990932-47991075)
chr7 (59-233)||(25119736-25119911)
chr7 (102-230)||(39837393-39837521)
chr7 (58-231)||(7907451-7907622)
chr7 (194-232)||(11667127-11667165)
chr7 (195-233)||(21148535-21148573)
chr7 (192-233)||(18333033-18333074)
chr7 (194-231)||(20011347-20011384)
chr7 (194-231)||(42121449-42121486)
chr7 (183-232)||(43131878-43131927)
chr7 (195-235)||(10679244-10679284)
chr7 (194-234)||(20884446-20884486)
chr7 (195-231)||(38073565-38073601)
chr7 (195-223)||(39983214-39983242)
[»] chr1 (17 HSPs)
chr1 (58-207)||(11017957-11018106)
chr1 (77-223)||(16583171-16583317)
chr1 (61-223)||(41884618-41884780)
chr1 (56-153)||(1035563-1035660)
chr1 (53-232)||(16394817-16394996)
chr1 (58-232)||(36012406-36012580)
chr1 (84-229)||(28490492-28490636)
chr1 (58-223)||(25366732-25366897)
chr1 (59-223)||(29032932-29033101)
chr1 (102-229)||(4084739-4084866)
chr1 (132-181)||(14758780-14758829)
chr1 (58-229)||(8644680-8644857)
chr1 (53-188)||(31262550-31262686)
chr1 (159-222)||(26952012-26952075)
chr1 (192-223)||(50404196-50404227)
chr1 (195-233)||(3491404-3491442)
chr1 (194-231)||(27211448-27211485)
[»] chr3 (28 HSPs)
chr3 (58-223)||(47006593-47006758)
chr3 (58-232)||(39430257-39430431)
chr3 (55-222)||(19961128-19961294)
chr3 (77-231)||(4539872-4540026)
chr3 (58-231)||(33791476-33791649)
chr3 (56-231)||(26040812-26040985)
chr3 (61-233)||(25101971-25102141)
chr3 (53-152)||(17587048-17587147)
chr3 (59-150)||(25134160-25134250)
chr3 (53-207)||(18029980-18030134)
chr3 (53-178)||(55158473-55158596)
chr3 (58-233)||(47069208-47069381)
chr3 (167-233)||(35306532-35306598)
chr3 (58-228)||(47849918-47850088)
chr3 (58-112)||(25096279-25096333)
chr3 (195-232)||(37387475-37387512)
chr3 (58-230)||(13637887-13638059)
chr3 (194-233)||(37238757-37238796)
chr3 (194-229)||(45054769-45054804)
chr3 (55-150)||(48192639-48192734)
chr3 (194-233)||(51980683-51980722)
chr3 (194-232)||(38773655-38773693)
chr3 (84-222)||(45628334-45628472)
chr3 (58-123)||(35306618-35306683)
chr3 (194-223)||(37238907-37238936)
chr3 (194-242)||(43310598-43310646)
chr3 (58-202)||(52859539-52859683)
chr3 (84-152)||(53741346-53741414)
[»] chr4 (23 HSPs)
chr4 (58-210)||(27918348-27918500)
chr4 (59-230)||(14138973-14139144)
chr4 (58-223)||(36989830-36989994)
chr4 (58-233)||(50297626-50297801)
chr4 (117-233)||(29508720-29508836)
chr4 (55-229)||(54997695-54997870)
chr4 (58-233)||(564100-564275)
chr4 (59-223)||(20537301-20537466)
chr4 (53-153)||(42051181-42051281)
chr4 (58-153)||(1961607-1961702)
chr4 (53-231)||(22019381-22019559)
chr4 (58-223)||(24940628-24940792)
chr4 (159-232)||(30033474-30033547)
chr4 (60-169)||(45249943-45250052)
chr4 (131-201)||(29818477-29818547)
chr4 (59-188)||(54719656-54719789)
chr4 (194-233)||(28675674-28675713)
chr4 (80-151)||(30033589-30033660)
chr4 (192-231)||(30666973-30667012)
chr4 (195-232)||(20574848-20574885)
chr4 (191-231)||(39414516-39414556)
chr4 (109-177)||(40311723-40311791)
chr4 (109-177)||(40321799-40321867)
[»] chr5 (15 HSPs)
chr5 (55-232)||(554278-554455)
chr5 (102-232)||(29557513-29557643)
chr5 (58-153)||(41144650-41144745)
chr5 (83-201)||(10523677-10523795)
chr5 (58-181)||(14547820-14547943)
chr5 (58-232)||(26105006-26105180)
chr5 (53-112)||(7738559-7738618)
chr5 (194-232)||(12289133-12289171)
chr5 (192-233)||(34178227-34178268)
chr5 (126-222)||(40044801-40044897)
chr5 (194-231)||(9780697-9780734)
chr5 (192-233)||(28735262-28735303)
chr5 (194-231)||(29429739-29429776)
chr5 (60-181)||(43340278-43340399)
chr5 (195-223)||(10431554-10431582)
[»] chr6 (9 HSPs)
chr6 (59-229)||(6469543-6469713)
chr6 (55-178)||(30249138-30249261)
chr6 (58-229)||(3787425-3787596)
chr6 (51-112)||(16126156-16126217)
chr6 (194-233)||(7509631-7509670)
chr6 (183-233)||(11752928-11752978)
chr6 (192-230)||(15528318-15528356)
chr6 (193-222)||(25407886-25407915)
chr6 (80-153)||(29285988-29286061)
[»] scaffold0116 (1 HSPs)
scaffold0116 (84-153)||(3031-3100)
[»] scaffold0542 (1 HSPs)
scaffold0542 (58-147)||(4512-4601)
[»] scaffold0008 (1 HSPs)
scaffold0008 (182-223)||(240568-240609)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 15067591 - 15067764
Alignment:
Q  80 aaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttg 179  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  15067591 aaggcacaagttaaggaactcgttatagaaataaacgtatcaaaagtcgtgcagtcaatttctcaaaagttaaattatgatgttttccaatgcaaagttg 15067690  T
Q  180 cttattttatattccttaacatgtgcccttagggcacaagttaagatgacccttgaacttatttacttatttgt 253  Q
    |||||||||  |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||    
T  15067691 cttattttaggttccttaacatgtgcctttacggcacaagttaacatgacccttgaacttatttacttatttgt 15067764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 8114443 - 8114293
Alignment:
Q  83 gcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctt 182  Q
    |||||| ||||| ||||| ||||| ||||| | |||| ||| |||||||| |||| || | |||| ||||||||  |||||||  ||| |||| |||||     
T  8114443 gcacatgttaagaaactcattataaaaatatatgtattaaaagtcgtgcagtcaattttttaaaaattaaattatcatgttttttaatgcaaaattgctc 8114344  T
Q  183 attttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  8114343 attttaaattccttaacatgtgcccttagggcacaagttaacatgaccctt 8114293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 6530303 - 6530478
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| |||| ||||||| ||||||||||  ||| ||||||| | | || ||| |||||||| ||||||||| |||||| ||  ||     
T  6530303 caaatgctaacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatatat 6530402  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     |||||||||||| ||||||||||  ||||   || ||||||||||| ||||||| |||||||||| |||||||||    
T  6530403 tatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccctt 6530478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 31313304 - 31313450
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| |||| ||||||| |||||||| || ||||||||||| |||||||||| ||| |||| ||||||| | ||||||| |  ||     
T  31313304 caaatgctaacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatat 31313403  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtg 204  Q
     |||||||||||| ||||||||||  ||||| ||| |||||||||||    
T  31313404 tatgttttccaatgcaaagttgctctttttagattgcttaacatgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 13948947 - 13949117
Alignment:
Q  62 tgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaa-gttaaattacgat 160  Q
    |||||| ||||| |||||| ||||||| ||||| ||||  ||||||||||| ||||| |||| |||||| | |||| |||| |||| |||||||||  ||    
T  13948947 tgttaatttgtgtcttcaatggcacatgttaagaaacttattatagaaatatacgta-caaaagtcgtgtagtcaatttcttaaaaagttaaattatcat 13949045  T
Q  161 gttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||  |||| ||||||||| ||||||  |||||||||||||||  ||||| |||||||||| ||||||||    
T  13949046 gttttttaatataaagttgctcattttacgttccttaacatgtgcttttaggacacaagttaacatgaccct 13949117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 8867182 - 8867342
Alignment:
Q  61 atgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgat 160  Q
    ||||||||||||||||| || ||||||| |||| |||||| ||||||||||| ||| |||||| || ||||| ||||||||| |||| ||||| |   ||    
T  8867182 atgttaacttgtgccttgaagggcacatgttaaagaactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaaatgttat 8867281  T
Q  161 gttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
    |||||| |||  || ||| ||| |||    ||| |||||||||||| |||||||||||||||    
T  8867282 gttttctaatgtaatgttactt-tttagcgttctttaacatgtgccattagggcacaagtta 8867342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 5493454 - 5493368
Alignment:
Q  54 tagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaactt 140  Q
    |||||||||| ||||||||||| |||| ||||||| ||||| || || ||||||||||| ||| |||||| |||||||| |||||||    
T  5493454 tagacaaatgctaacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactt 5493368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 42685750 - 42685876
Alignment:
Q  102 ttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacat 201  Q
    |||||||||||   |||||||| |||||| | ||||||||| |||||||||| ||  ||||||| |||| |||| | |||| ||||  ||||||||||||    
T  42685750 ttatagaaatatgtgtatcaaaagtcgtgtagtcaacttctaaaaagttaaaatattatgtttttcaatgcaaaatagctttttttgaattccttaacat 42685849  T
Q  202 gtgcccttagggcacaagttaagatga 228  Q
    ||||| |||||  ||||||||| ||||    
T  42685850 gtgcctttaggatacaagttaacatga 42685876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 40505417 - 40505323
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    ||||| ||||||||| | ||||||| |||| ||||||||||| ||||  ||||| |  ||||||| |||||||| ||||||||| ||||||||||    
T  40505417 aaatgctaacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaa 40505323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 8769161 - 8768998
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaa-gttaaattac 157  Q
    ||||| ||||| ||| | |||| ||||||||||||||||||| ||||||||||| | |||| ||| || ||||| |||  |||| |||| |||||| ||     
T  8769161 aaatgctaactggtggcctcaagggcacatcttaaggaactcattatagaaatatatgtataaaaagttgtgcattcatattcttaaaaggttaaaatat 8769062  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
     || |||| ||||| |||||||| | |||||  || |||||||||||| |||||| ||||||||||    
T  8769061 catatttt-caatataaagttgc-tcttttaggtttcttaacatgtgctcttaggacacaagttaa 8768998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 5959982 - 5959945
Alignment:
Q  184 ttttatattccttaacatgtgcccttagggcacaagtt 221  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5959982 ttttagattccttaacatgtgcccttagggcacaagtt 5959945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 45244677 - 45244758
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaactt 140  Q
    ||||||||||||||| |   |||| ||||| |||| |||||| ||||||||||| |||||| ||| |||||||| |||||||    
T  45244677 aaatgttaacttgtgtccctaaagacacatgttaatgaactcattatagaaatatacgtattaaaagtcgtgcattcaactt 45244758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 30875717 - 30875757
Alignment:
Q  189 tattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  30875717 tattccttaacttgtgcccttagggcacaagttaacatgac 30875757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 35865131 - 35865303
Alignment:
Q  60 aatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacga 159  Q
    |||||||| |||| || |||| |||| || ||||||||||  ||||||||||| || ||||||| |||| | | ||||||| | |||||||||| ||  |    
T  35865131 aatgttaagttgttccctcaagggcatatgttaaggaacttattatagaaatatacatatcaaaagtcgcgtagtcaactttttaaaagttaaaatatta 35865230  T
Q  160 tgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    | ||||| |||  ||| || |   |||||  ||| |||||||||| |||||||||||| ||||| || |||||    
T  35865231 tattttctaatgtaaaattacactttttaggttctttaacatgtgtccttagggcacaggttaacataaccct 35865303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 21372451 - 21372610
Alignment:
Q  69 ttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttcca 168  Q
    ||||||| |||| || | || ||||||||||  ||||||||||| ||| || ||| |||||| | ||||||| | |||||||||| |   ||||||||||    
T  21372451 ttgtgccctcaagggaatatgttaaggaacttattatagaaatatacgcataaaaagtcgtgtattcaactttttaaaagttaaagtgttatgttttcca 21372550  T
Q  169 atacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatga 228  Q
    || |||| || ||  ||| |  || |||||||||| |||| ||||| |||||||| ||||    
T  21372551 atgcaaatttactcttttcaggtttcttaacatgttccctaagggcgcaagttaacatga 21372610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 11258000 - 11258038
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  11258000 ttaacatgtgccctaagggcacaagttaacatgaccctt 11258038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 34576689 - 34576779
Alignment:
Q  62 tgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||||| |||||||||||| |||||||  |||| ||||  |||| ||||||  || |||||| |||||||| ||||||||| |||| ||||    
T  34576689 tgttaatttgtgccttcaagggcacatgctaagaaacttattatggaaatatgcggatcaaaagtcgtgcattcaacttcttaaaaattaa 34576779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 25186277 - 25186305
Alignment:
Q  194 cttaacatgtgcccttagggcacaagtta 222  Q
    |||||||||||||||||||||||||||||    
T  25186277 cttaacatgtgcccttagggcacaagtta 25186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 409889 - 410070
Alignment:
Q  52 gttagacaaatgttaacttgtgccttcaaagg-cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt 150  Q
    ||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  409889 gttaggcaaatgttaacttgtgccttcaaagggcatatgttaaggaactcgttatagaaataaacttatcaaaagtcgtgcagtcaacttctcaaaagtt 409988  T
Q  151 aaattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||||  ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  409989 aaattacgatgtttt-gaatgcaaagttgcttattttaggttccttaacatgtgcccttagggcacaagttaacatgaccctt 410070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 44068950 - 44068774
Alignment:
Q  54 tagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    |||||||||||||| ||||||  |||||| ||||| |||||||| || ||||||||||| | |||||||| |||||||||||||||||| ||||||||||    
T  44068950 tagacaaatgttaatttgtgctctcaaagacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaa 44068851  T
Q  154 ttacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgacc 230  Q
    |||  ||||||| |||| |||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  44068850 ttatcatgtttttcaatgcaaagttgttcattttagattccttaacatgtgcccttagggcacaagttaacatgacc 44068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 25626470 - 25626640
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| ||||  |||||| |||| |||||  |||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||     
T  25626470 caaatgctaacttgtgccctcaagagcacatgttaaagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaattat 25626569  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatga 228  Q
     |||||||||||| |||||||| | ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  25626570 catgttttccaattcaaagttgttcattttaggttccttaacatgtgcccttagggcacaagttaacatga 25626640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 29877173 - 29877009
Alignment:
Q  64 ttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgtt 163  Q
    ||||||||||||||||||| ||||| |||| |||||| ||||| ||||||| |||| ||| |||||||| |||| ||||||||||||||||||  || ||    
T  29877173 ttaacttgtgccttcaaagacacatgttaaagaactcattataaaaataaatgtattaaaagtcgtgcagtcaatttctcaaaagttaaattataatatt 29877074  T
Q  164 ttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatga 228  Q
    || |||| |||| |||||||||||| ||| |||||||||| |||||||  |||||||||| ||||    
T  29877073 tttcaatgcaaaattgcttattttaaatttcttaacatgtacccttagaacacaagttaacatga 29877009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 30549081 - 30549226
Alignment:
Q  83 gcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctt 182  Q
    |||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||  |||||||  ||| |||| |||||     
T  30549081 gcacatgttaaggaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaattatcatgttttttaatgcaaatttgctc 30549180  T
Q  183 attttatattccttaacatgtgcccttagggcacaagttaagatga 228  Q
    ||||||  ||||||||||||| || |||| ||||||||||| ||||    
T  30549181 attttaagttccttaacatgttcctttagagcacaagttaacatga 30549226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 233
Target Start/End: Complemental strand, 32294668 - 32294499
Alignment:
Q  64 ttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgtt 163  Q
    |||||||||||| |||| ||||||| ||||||||||| ||||||||||| | |||| ||| |||||||| ||||||||| |||||| ||| ||  |||||    
T  32294668 ttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaactattatgtt 32294569  T
Q  164 ttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||  ||| |||||  |||||  ||| |||||||||||| |||||||||||||||  |||||||||    
T  32294568 ttccaatgtaaatttgctctttttaggttctttaacatgtgcctttagggcacaagttagcatgaccctt 32294499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 20061219 - 20061055
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||||||| |||| |||||||  |||||||||| ||||||||||| |||||||||| || ||||| ||||||||| ||||||| |  ||     
T  20061219 caaatgttaacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatat 20061120  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
     ||||||| |||| ||||||||||  |||||  || ||||||||||||||| |||| ||||||||    
T  20061119 tatgtttttcaatgcaaagttgctctttttaggttgcttaacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 39420357 - 39420193
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| |||||||| |  |||| ||||||| ||||||||||| ||||||||||| || ||| ||| |||||||| |||||||||  ||||||||| ||     
T  39420357 caaatgctaacttgttcgctcaagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatat 39420258  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
     |||||||||||| ||||||||||  |||||  |||||||||||||||| | |||||||||||||    
T  39420257 tatgttttccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 14275753 - 14275927
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| |||||||||||  ||| ||||||| ||||||||||| ||||||||||| |||||||||| ||| |||| ||||||||| |||||||||  ||     
T  14275753 caaatgctaacttgtgccc-caagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatat 14275851  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     |||||||||||| |||| |||||  ||||   || ||||| ||||||| |||||| ||||||||  |||||||||    
T  14275852 tatgttttccaatgcaaaattgctctttttgggttgcttaatatgtgcctttagggaacaagttagcatgaccctt 14275927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 2889100 - 2889268
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||||||||||||||| |||| ||||||| |||| |||||  ||||| ||||| || |||||||  |||| || ||||||||| |||||| |||     
T  2889100 agacaaatgttaacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaagtcaaaa 2889199  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    |   || |||| ||||||||| || ||  ||||| ||||||||||||||||||| || ||| |||||||    
T  2889200 tttcatatttttcaatacaaaattcctctttttaaattccttaacatgtgccctaagagcaaaagttaa 2889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 7743857 - 7743714
Alignment:
Q  90 ttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttat 189  Q
    |||| |||||| ||||||||||| | | ||| || |||||||| | ||||||| |||||||||||||| |||||||||  | |||||||||| |||||      
T  7743857 ttaaagaactcattatagaaatatatgcatcgaaagtcgtgcagttaacttcttaaaagttaaattaccatgttttcccgtgcaaagttgctcattttgg 7743758  T
Q  190 attccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     || |||||||| |||||||| | ||||| |||| |||||||||    
T  7743757 gtttcttaacatatgcccttaagacacaaattaacatgaccctt 7743714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 25626413 - 25626319
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||||| ||||||||||| ||||   ||||| ||||||||||  ||||||||||| |||||||||| ||||| || ||||||||| |||||||||    
T  25626413 caaatgctaacttgtgccctcaataacacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 9950290 - 9950430
Alignment:
Q  82 ggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgct 181  Q
    ||||||| |||||||| |  ||||||||||| |||||  ||| |||||||| ||||||| | |||||||||| ||  |||||||||||| ||||||| ||    
T  9950290 ggcacatattaaggaatttattatagaaatatacgtactaaaagtcgtgcagtcaacttttaaaaagttaaaatattatgttttccaatgcaaagttcct 9950389  T
Q  182 tattttatattccttaacatgtgcccttagggcacaagtta 222  Q
      |||    ||| |||||||||||||||||  |||||||||    
T  9950390 cttttcgggttctttaacatgtgcccttagaacacaagtta 9950430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 39364445 - 39364593
Alignment:
Q  84 cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctta 183  Q
    ||||| ||||||||||  |||||||||||  | ||||||| |||||  | | ||||||| |||||||||| ||  |||||||||||| |||||||| |      
T  39364445 cacatgttaaggaacttattatagaaatatgcatatcaaaagtcgtatagtaaacttctaaaaagttaaaatattatgttttccaatgcaaagttgttat 39364544  T
Q  184 ttttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||   ||| |||||| ||||||||| |||| ||||||| ||||||||    
T  39364545 ttttgggttcattaacacgtgcccttatggcataagttaacatgaccct 39364593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 21620675 - 21620635
Alignment:
Q  191 ttccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  21620675 ttccttaacttgtgcccttagggcacaagttaagatgaccc 21620635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 36278361 - 36278289
Alignment:
Q  162 ttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcac-aagttaagatgaccctt 233  Q
    ||||||||||||||||||||  |||||  ||||||||||||||  |||||||||| ||||||| |||||||||    
T  36278361 ttttccaatacaaagttgctctttttaggttccttaacatgtgttcttagggcacaaagttaacatgaccctt 36278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 7061546 - 7061692
Alignment:
Q  83 gcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctt 182  Q
    |||||| |||| |||||  ||||||||||| | | |||||| |||||| ||| ||||||| |||||||||| ||  |||  || ||||  ||||||||||    
T  7061546 gcacatgttaaagaacttattatagaaatatatgcatcaaaagtcgtgtaataaacttctaaaaagttaaaatatcatggatttcaatggaaagttgctt 7061645  T
Q  183 attttatattccttaacatgtgcccttagggcacaagttaagatgacc 230  Q
     ||||   ||||||||||| |||| |||||||||| ||||| ||||||    
T  7061646 -ttttgggttccttaacatatgccgttagggcacacgttaacatgacc 7061692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 37230558 - 37230650
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt 150  Q
    |||||| |||||||||||||||| | ||||| | |||||| || ||||| ||||| | |||||||| ||| |||| |||| |||| |||||||    
T  37230558 caaatgctaacttgtgccttcaaggacacatgtaaaggaaatcattatataaatatatgtatcaaaagtcatgcattcaatttcttaaaagtt 37230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 41890106 - 41890030
Alignment:
Q  102 ttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagtt 178  Q
    ||||||||||| ||| |||||| |||||||| ||||||||| |||| ||||| |   |||||||||||| |||||||    
T  41890106 ttatagaaatatacgcatcaaaagtcgtgcattcaacttcttaaaaattaaaatgttatgttttccaatgcaaagtt 41890030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 1705065 - 1705128
Alignment:
Q  160 tgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    ||||||||||| |||| |||||  |||||  || ||||||||||||||| ||||||||||||||    
T  1705065 tgttttccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagttaa 1705128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 2641570 - 2641628
Alignment:
Q  163 tttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    |||||||| ||||||||||  ||||  ||||||||||||||||| ||||||||||||||||    
T  2641570 tttccaatgcaaagttgctctttttg-attccttaacatgtgcc-ttagggcacaagttaa 2641628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 32786787 - 32786960
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| |||| ||||||| ||||||||||| ||||| ||||| |||||||||| |||||||| ||||||||| |||||||||| ||     
T  32786787 caaatgctaacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatat 32786886  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
     |||||||||||||||||||||||  |||    ||||||||||||||||||||||||||||||||  |||||||    
T  32786887 tatgttttccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgaccc 32786960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 28337215 - 28337375
Alignment:
Q  72 tgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaata 171  Q
    |||| |||| ||||||| ||||| ||||| ||||||||||| | |||| |||  ||||||||||||||||| |||||||||| ||| || |||| ||||     
T  28337215 tgccctcaagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatg 28337314  T
Q  172 caaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||||||||  ||||| |||||||||||||| || |||||||| || |||| ||||||||    
T  28337315 caaagttgctctttttagattccttaacatgtacctttagggcataatttaacatgaccct 28337375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 26081140 - 26080962
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||| ||||||||| | |||| ||||||| ||||||||||| ||||||||||| || ||| |||  | ||||  ||||||||| ||||||||||     
T  26081140 agacaaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaa 26081041  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||  ||||||| |||| |||| ||| |  ||||   ||||||||||||||||||||| |||| |||||| |||||||||    
T  26081040 tattatgttttacaatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgaccctt 26080962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 26104927 - 26104749
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||| ||||||||| | |||| ||||||| ||||||||||| ||||||||||| || ||| |||  | ||||  ||||||||| ||||||||||     
T  26104927 agacaaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaa 26104828  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||  ||||||| |||| |||| ||| |  ||||   ||||||||||||||||||||| |||| |||||| |||||||||    
T  26104827 tattatgttttacaatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgaccctt 26104749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 32546696 - 32546877
Alignment:
Q  51 agttagacaaatgttaacttgtgcc-ttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagt 149  Q
    ||||||| ||||||||||||||||| || || ||||||  ||||  ||||| ||||||||||| ||| |||||| |||| ||||||||||||| ||||||    
T  32546696 agttagataaatgttaacttgtgccctttaagggcacacgttaaaaaactccttatagaaatatacgcatcaaaagtcgggcaatcaacttcttaaaagt 32546795  T
Q  150 taaattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||||  || ||||  ||| |||| ||||| |||||   |||||||| ||||||||| |||||||||||||| || |||||    
T  32546796 taaattatcatattttttaatgcaaa-ttgctcattttgggttccttaatatgtgccctaagggcacaagttaacatcaccct 32546877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 45837805 - 45837980
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||| |||||||  ||| ||||||| |||||  |||| ||||||||||| || ||||||||| |||||| ||||||| | |||||||    ||     
T  45837805 caaatgctaatttgtgcccacaagggcacatgttaagatactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcatat 45837904  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
      ||||||||||| ||||||||||  ||||| ||| ||||||||||||||| |||||||||||||  |||||||||    
T  45837905 tgtgttttccaatgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccctt 45837980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 47991075 - 47990932
Alignment:
Q  90 ttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttat 189  Q
    |||||||| || ||||||| ||| |||||||||| | |||||| | |||| || |||||||||||||  |||||||||||| ||||||| || ||||||     
T  47991075 ttaaggaattcattatagatatatacgtatcaaaagccgtgcagtgaactccttaaaagttaaattatcatgttttccaatgcaaagttactcattttag 47990976  T
Q  190 attccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     ||||||||||| | |||||||| |||||||||| || ||||||    
T  47990975 gttccttaacatatacccttaggacacaagttaacattaccctt 47990932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 233
Target Start/End: Original strand, 25119736 - 25119911
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacg 158  Q
    ||||||||||||||||| |||||   | || ||||| ||||  || |||||||| |||||  ||| |||||||| |  |||||| |||||||||| ||      
T  25119736 aaatgttaacttgtgccctcaaaaatatatgttaagaaacttattgtagaaatacacgtactaaaagtcgtgcatttgacttcttaaaagttaaaatatt 25119835  T
Q  159 atgttttccaatacaaagttgcttattttata-ttccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||| ||| |||| ||||||| ||| |||| |  ||||||||||||||||||||||||||||||||| |||||||||    
T  25119836 atgattttcaatgcaaagttacttttttttttgttccttaacatgtgcccttagggcacaagttaacatgaccctt 25119911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 39837521 - 39837393
Alignment:
Q  102 ttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacat 201  Q
    ||||||||||| |||||||||| |||||||| ||||||||| ||||||| |  ||  || |||| || | ||||||||||  ||||| |||  |||||||    
T  39837521 ttatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaacat 39837422  T
Q  202 gtgcccttagggcacaagttaagatgacc 230  Q
     |||||| |||||||||||||| ||||||    
T  39837421 atgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 7907451 - 7907622
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||||||| |||| ||||||| |||||  |||| ||||||||||| || |||||||   | |||| ||||||||| |||| ||    ||     
T  7907451 caaatgttaacttgtgccctcaa-ggcacatgttaagatactcattatagaaatagacatatcaaaaaccatgcattcaacttcttaaaaattgttatat 7907549  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
      | ||||||||| |||| || ||| |||||  || ||||||||||||| | |||||||||||||| |||||||    
T  7907550 tgtattttccaatgcaaaattactt-ttttaggttgcttaacatgtgccttaagggcacaagttaacatgaccc 7907622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 11667127 - 11667165
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  11667127 cttaacatgtgccctaagggcacaagttaacatgaccct 11667165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 21148535 - 21148573
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  21148535 ttaacatgtgcccttagggcacaaattaacatgaccctt 21148573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 18333033 - 18333074
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||| ||||||||||||||||||||| | |||||||    
T  18333033 tccttaacatatgcccttagggcacaagttaataagaccctt 18333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 20011347 - 20011384
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  20011347 cttaacttgtgcccttagggcacaagttaacatgaccc 20011384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 42121449 - 42121486
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  42121449 cttaacatgtgcccttagggcataagttaacatgaccc 42121486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 43131927 - 43131878
Alignment:
Q  183 attttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||| | |||||||| |||||||| |||||||||||||| ||||||||    
T  43131927 attttaaactccttaacttgtgccctaagggcacaagttaacatgaccct 43131878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 10679244 - 10679284
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgacccttga 235  Q
    |||||||||||||| |||||||||||||| |||||| ||||    
T  10679244 ttaacatgtgccctaagggcacaagttaacatgaccattga 10679284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 20884486 - 20884446
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgacccttg 234  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  20884486 cttaacatgtaccctaagggcacaagttaacatgacccttg 20884446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 38073601 - 38073565
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    |||||||||||||| |||||||||||||| |||||||    
T  38073601 ttaacatgtgccctaagggcacaagttaacatgaccc 38073565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 39983214 - 39983242
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaa 223  Q
    |||||||||||||||||||||||||||||    
T  39983214 ttaacatgtgcccttagggcacaagttaa 39983242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 11018106 - 11017957
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||||||  |||| ||||||| ||||||||||  ||||||||||| |||||| ||| |||||||| ||||||||| |||||||||||||     
T  11018106 caaatgttaacttgtgctctcaagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattat 11018007  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgccc 207  Q
     |||||||||||| |||||||||| ||||||  |||||||||||||||||    
T  11018006 catgttttccaatgcaaagttgctcattttaggttccttaacatgtgccc 11017957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 16583171 - 16583317
Alignment:
Q  77 tcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaag 176  Q
    ||||| |||||| ||||||||||  ||||| ||| | |||||||||| |||||| | ||||||||| || ||||||||||  |||||||| |||  ||||    
T  16583171 tcaaaagcacatgttaaggaacttattataaaaacatacgtatcaaaagtcgtgtagtcaacttcttaatagttaaattatcatgttttctaatttaaag 16583270  T
Q  177 ttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    ||||| | |||  ||||||||||||||||||||| | ||||||||||    
T  16583271 ttgctcaatttggattccttaacatgtgcccttatgacacaagttaa 16583317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 41884780 - 41884618
Alignment:
Q  61 atgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgat 160  Q
    ||||||||||||||| |||| ||||||| ||||| ||||| ||||||||| | || ||||||| ||| |||| |  |||||| |||||||||| ||   |    
T  41884780 atgttaacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatatttt 41884681  T
Q  161 gttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
     ||||||||| |||||||| || | |||  |||||||||||||||| ||| ||||||||||||    
T  41884680 attttccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaa 41884618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 1035563 - 1035660
Alignment:
Q  56 gacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||| || ||||||| ||| |||| ||||||| | ||||||||||    
T  1035563 gacaaatgttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaa 1035660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 16394817 - 16394996
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| |||||| ||||||||| |||||| |  |||| ||||||||||| ||||| ||||| |||||| ||| ||||  || || |||||| |||||||||    
T  16394817 ttaggcaaatgctaacttgtgtcttcaaggatacatgttaaggaactcattataaaaatatacgtattaaaagtcgaacagtctacttcttaaaagttaa 16394916  T
Q  153 attacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||  ||||||| |||| |||||||| | |||||   ||||||||| |||||||||| | || ||||||  ||||||||    
T  16394917 attatcatgtttttcaatgcaaagttgttcattttgggttccttaacttgtgcccttatgacataagttagcatgaccct 16394996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 232
Target Start/End: Complemental strand, 36012580 - 36012406
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    ||||||||||||||||| || |  ||||||| |||| |||||  ||||||||||| | ||||  || ||||| |||||||||||| |||| ||||||||     
T  36012580 caaatgttaacttgtgcttttacgggcacatgttaaagaacttattatagaaatataagtattgaaagtcgtacaatcaacttcttaaaaattaaattat 36012481  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
      ||||||||||| || ||||| | |||||| |||||||||||| |||| || || | ||| |||| ||||||||    
T  36012480 cgtgttttccaatgcatagttgttcattttagattccttaacatatgccttttggacgcaaattaacatgaccct 36012406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 28490636 - 28490492
Alignment:
Q  84 cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctta 183  Q
    ||||| |||||||| || ||||||||||| || |||||||  ||||||||||||||||| |||||||||| ||  |||||||  |||||| |||||||      
T  28490636 cacatgttaaggaattcattatagaaatatacatatcaaaa-tcgtgcaatcaacttctaaaaagttaaaatattatgttttttaatacatagttgctct 28490538  T
Q  184 ttttatattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
    ||||   ||||||||||| || ||||| |||| ||||||| |||||    
T  28490537 ttttgagttccttaacatatgtccttaaggcataagttaacatgac 28490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 25366732 - 25366897
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||| ||||||||||||  |||| | ||||| |||||||||||  ||||||| ||  ||||||||| |||||| ||| ||||| | |||||||||| ||     
T  25366732 caaacgttaacttgtgctctcaaggacacatgttaaggaactcaatatagaattatccgtatcaaaagtcgtgtaataaactttttaaaagttaaactat 25366831  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
     |||||| |||||| ||| || ||  |||||  || ||||||||||||  ||||| ||||||||||    
T  25366832 tatgtttcccaatataaatttactctttttaagtttcttaacatgtgcttttaggacacaagttaa 25366897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 29033101 - 29032932
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtta-----aa 153  Q
    ||||| ||| |||||||||||| | ||||| |||||||| ||  |||||||||| |||||||||| || ||||| ||||||||| ||||||||      |    
T  29033101 aaatgctaatttgtgccttcaatgacacatgttaaggaaatcagtatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttacatgcta 29033002  T
Q  154 ttacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    |||| || ||||| ||| ||||||| ||  ||||| |||  ||||||||||| || | ||||||||||||    
T  29033001 ttactatattttctaatgcaaagttactctttttaaattttttaacatgtgctctaaaggcacaagttaa 29032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 4084739 - 4084866
Alignment:
Q  102 ttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacat 201  Q
    ||||||||||| |||||| ||| |||||| | ||||||| | ||||||||||| |  ||||||| ||||  ||| |||||||||||   ||| ||||||     
T  4084739 ttatagaaatatacgtattaaaagtcgtgtagtcaactttttaaaagttaaataatcatgtttttcaatgtaaatttgcttattttgggttctttaacac 4084838  T
Q  202 gtgcccttagggcacaagttaagatgac 229  Q
    ||||||||||  |||||||||| |||||    
T  4084839 gtgcccttagaacacaagttaacatgac 4084866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 14758780 - 14758829
Alignment:
Q  132 aatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgct 181  Q
    ||||||||||| |||||||||| ||  |||||||||||||||||||||||    
T  14758780 aatcaacttcttaaaagttaaaatattatgttttccaatacaaagttgct 14758829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 8644857 - 8644680
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgc-------aatcaacttctcaaaagtt 150  Q
    |||||||||||||||||| |||| ||||||| ||||  ||||| ||||||||||| ||  || ||| ||| |||       | ||||||||| |||| ||    
T  8644857 caaatgttaacttgtgccctcaagggcacatgttaataaactcattatagaaatatacacattaaaagtcatgcattcatgattcaacttcttaaaaatt 8644758  T
Q  151 aaattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
    ||| |   || ||||||||| ||||||||||| ||||  ||| ||||||||  || ||||||||||||||||| |||||    
T  8644757 aaaatgttatattttccaatgcaaagttgctt-ttttggatttcttaacatacgctcttagggcacaagttaacatgac 8644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 31262550 - 31262686
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaata-aacgtatcaaacgtcgtgcaatcaacttctcaaaagtta 151  Q
    |||| |||||| |||||||| || |||| |||| || ||||| ||||| ||||||||||| ||| |||||||  | ||||| ||||||||| |||||||     
T  31262550 ttaggcaaatgctaacttgtaccctcaagggcatatattaagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttg 31262649  T
Q  152 aattacgatgttttccaatacaaagttgcttatttta 188  Q
    |  ||  |||||||||||| |||| ||| || |||||    
T  31262650 acatattatgttttccaatgcaaaattgtttttttta 31262686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 26952075 - 26952012
Alignment:
Q  159 atgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
    |||||||||||||||||||| ||  |||||| || |||||||| ||||||||||| | ||||||    
T  26952075 atgttttccaatacaaagttactctttttatgtttcttaacatatgcccttagggtaaaagtta 26952012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 50404227 - 50404196
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaa 223  Q
    ||||||||||||||||||||||||||||||||    
T  50404227 tccttaacatgtgcccttagggcacaagttaa 50404196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 3491442 - 3491404
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  3491442 ttaacatgtgccctaagggcacaagttaacatgaccctt 3491404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 27211448 - 27211485
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  27211448 cttaacatgtgccctaagggcacaagttaacatgaccc 27211485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 47006593 - 47006758
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||||||| |||| ||||||| ||||||||||  |||||||||||  || |||||| |||||||| ||||||||| |||| ||||| |      
T  47006593 caaatgttaacttgtgccctcaagggcacatgttaaggaactttttatagaaatattcgcatcaaaagtcgtgcattcaacttcttaaaatttaaaatgt 47006692  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
     |||||||||||| ||||||||||| ||||   ||||||||||||| |||||||||||||||||||    
T  47006693 tatgttttccaatgcaaagttgctttttttgggttccttaacatgtacccttagggcacaagttaa 47006758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 39430257 - 39430431
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| |||||| |||| |||| ||| |||||||| |||||| ||||||||| | | |||||||| |||||||| ||||||||| |||||||||| ||     
T  39430257 caaatgctaacttatgccctcaagggcgcatcttaaagaactcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaaatat 39430356  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
     |||||||||||| ||||||||||  ||||   ||||||||||| || ||||||| |||||||||| ||||||||    
T  39430357 tatgttttccaatgcaaagttgctctttttgagttccttaacatatgtccttaggacacaagttaacatgaccct 39430431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 19961128 - 19961294
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||| ||||||||||| | || |  |||| ||||||||||  ||||||||||| |||||||||| || ||| | ||||||||| | ||||||||     
T  19961128 agacaaatgataacttgtgccctgaaggatacatgttaaggaactaattatagaaatatacgtatcaaaagttgtgtattcaacttct-agaagttaaaa 19961226  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
    ||  ||||||||||||||||| ||| | |||||| ||||||||||||||| | | |||| ||||||||    
T  19961227 tattatgttttccaatacaaaattgttcattttagattccttaacatgtgtcttaagggtacaagtta 19961294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 4539872 - 4540026
Alignment:
Q  77 tcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaag 176  Q
    |||||||||||| ||||| ||||| ||||| ||||| | |||| |||  ||||||||||||||||| |||||||||||||  ||||||| |||| ||||     
T  4539872 tcaaaggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgtttttcaatgcaaaa 4539971  T
Q  177 ttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||| | |||||   |||||||||||||||| |||   |||||||||| |||||||    
T  4539972 ttgttcattttgagttccttaacatgtgcctttaaaacacaagttaacatgaccc 4540026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 33791476 - 33791649
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||| | |||| | || || |||||||| || || || ||||| |||||||||| ||||| || ||||||| | |||||||||| ||     
T  33791476 caaatgctaacttgtgtcctcaacgacatatgttaaggaattcattgtaaaaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatat 33791575  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
     ||||||||||||  |||||| ||  ||||  |||| ||||||| |||| |||||||||||||||| |||||||    
T  33791576 tatgttttccaatgtaaagttactctttttcgattctttaacatatgcctttagggcacaagttaacatgaccc 33791649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 26040812 - 26040985
Alignment:
Q  56 gacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatc-aaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    |||||||||||| ||||||  |||| | ||||  ||||||||||||||||||||||| ||||||| ||| |||||||| | |||||||   ||||||||     
T  26040812 gacaaatgttaatttgtgctctcaatgacacacgttaaggaactcgttatagaaatatacgtatcaaaaagtcgtgcatttaacttct---aagttaaaa 26040908  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||  |||||||  ||| ||||||||||  |||||  ||| |||||||||   |||||| |||||||||| |||||||    
T  26040909 tattatgttttttaatgcaaagttgctccttttaggttctttaacatgtatacttaggacacaagttaacatgaccc 26040985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 25102141 - 25101971
Alignment:
Q  61 atgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgat 160  Q
    ||||||||||||||| |||| |||| || ||||||| ||| ||||||||||| | ||||||||  | ||| | | |||||||||||||||||| ||  ||    
T  25102141 atgttaacttgtgccctcaagggcatatgttaagga-ctcattatagaaatatatgtatcaaaaattgtgtatttaacttctcaaaagttaaaatatcat 25102043  T
Q  161 gttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     |||| ||||||||| |||||| || ||  |||||||| |||| |||||||| || ||||||| | |||||||    
T  25102042 atttttcaatacaaaattgctt-ttataggttccttaatatgtacccttaggacataagttaacacgaccctt 25101971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 17587048 - 17587147
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| ||||| |||||||||||| |||| ||||||| |||| ||||| || ||||||| | |||||||||| |||||||| ||||| ||| |||||||||    
T  17587048 ttaggcaaatattaacttgtgccctcaagggcacatgttaatgaacttgtaatagaaaaatacgtatcaaaagtcgtgcattcaacatcttaaaagttaa 17587147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 25134250 - 25134160
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt 150  Q
    ||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||||| || ||||||| |||||||    
T  25134250 aaatgttaacttgtgctctcaaagacacatgttaaggaactcattatagaaatatatgtatcaaaagtcgtgc-attaacttctaaaaagtt 25134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 18029980 - 18030134
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| ||||||||||||| |||| |||| ||||||| ||||||||||   || ||||||| | |||  ||| |||||||| |||| |||| |||||| ||    
T  18029980 ttaggcaaatgttaacttatgccctcaagggcacatgttaaggaacttaataaagaaatatatgtacgaaaagtcgtgcattcaatttcttaaaagtcaa 18030079  T
Q  153 attacgatgttttccaatacaaagttgcttattttatattccttaacatgtgccc 207  Q
    | ||  || ||||||||| ||||||| ||  |||||  |||||||||||||||||    
T  18030080 aatattatattttccaatgcaaagttactctttttaggttccttaacatgtgccc 18030134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 55158596 - 55158473
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| |||||||||||||||||| ||||  |||||| ||||| || |  ||||||||||| || ||| |||  ||||||||||||||||| |||||||||    
T  55158596 ttaggcaaatgttaacttgtgccctcaatagcacatgttaagaaatttattatagaaatatacatattaaa--tcgtgcaatcaacttcttaaaagttaa 55158499  T
Q  153 attacgatgttttccaatacaaagtt 178  Q
    || |  || |||||| ||||||||||    
T  55158498 atcatcatattttccgatacaaagtt 55158473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 47069381 - 47069208
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||| ||| | || ||||||| |||||||| |  |||| |||||| || ||||||| |||||||| ||||||| | |||||| ||||||     
T  47069381 caaatgttaacttgcgcccttaagggcacattttaaggaatttattatggaaatatacatatcaaaagtcgtgcagtcaactt-ttaaaagtcaaattat 47069283  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     || |||| ||||  ||| ||||| ||||||  ||||||||||||| | |||| | |||| ||||| |||||||||    
T  47069282 catatttttcaatgtaaa-ttgctcattttaggttccttaacatgtactcttaagacacaggttaatatgaccctt 47069208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 35306598 - 35306532
Alignment:
Q  167 caatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||||  ||||| ||||||||||||||||||||| || | ||||||| |||||||||    
T  35306598 caatacaaagttgctccttttagattccttaacatgtgcccttaaggtataagttaaaatgaccctt 35306532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 47850088 - 47849918
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||| ||||| | |||| | ||||| ||||||||||| ||||||||||| |  |||||||  || |||| || |||| | |||| ||||| ||     
T  47850088 caaatgttaatttgtgtcctcaaggacacatgttaaggaactcattatagaaatatatctatcaaaattcatgcattcgactttttaaaaattaaaatat 47849989  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatga 228  Q
     || |||| |||| ||||||||||| ||||| |||||||| ||||   ||||||  |||||||||| ||||    
T  47849988 tatatttttcaatgcaaagttgctttttttagattccttagcatgcatccttagaacacaagttaacatga 47849918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 25096279 - 25096333
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaata 112  Q
    ||||| ||| |||||||| |||||||||||| ||||||||||| |||||||||||    
T  25096279 caaatattatcttgtgccctcaaaggcacatgttaaggaactcattatagaaata 25096333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 37387475 - 37387512
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37387475 ttaacatgtgcccttagggcacaagttaacatgaccct 37387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 13637887 - 13638059
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| |||||| |||| ||||   ||||| ||||| || || ||||| ||||| ||| ||||||  ||||||| |||| |||| |||| ||||| |      
T  13637887 caaatgctaacttatgccctcaattacacatgttaagaaagtcattataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaaatgt 13637986  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgacc 230  Q
     |||||||||||   ||| ||| || |||||  ||| |||||||||||||| |||| ||||||||| ||||||    
T  13637987 tatgttttccaacgtaaaattgttttttttaggttctttaacatgtgccctcagggtacaagttaacatgacc 13638059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 37238796 - 37238757
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  37238796 cttaacatgtgccctaagggcacaagttaacatgaccctt 37238757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 45054769 - 45054804
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgac 229  Q
    |||||||||||||||||||||||||||||| |||||    
T  45054769 cttaacatgtgcccttagggcacaagttaacatgac 45054804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 48192734 - 48192639
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt 150  Q
    ||||||||||||| |||| ||||||| | ||||| ||||| ||||  ||||||||||| || ||| |||  ||| ||| ||||||||| |||||||    
T  48192734 agacaaatgttaatttgtaccttcaaggacacatgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagtt 48192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 51980722 - 51980683
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  51980722 cttaacatgtgccctaagggcacaagttaacatgaccctt 51980683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 38773655 - 38773693
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  38773655 cttaacatgtgccctaagggcacaagttaacatgaccct 38773693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 45628334 - 45628472
Alignment:
Q  84 cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctta 183  Q
    ||||| |||| |||||| |||| |||||| ||| |||||| || ||||| |||| || | | || ||||| |   ||||||| | || || ||||||||     
T  45628334 cacatgttaatgaactcattattgaaatatacgaatcaaaagttgtgcattcaattttttagaaattaaaatgttatgtttttcgatgcagagttgcttt 45628433  T
Q  184 ttttatattccttaacatgtgcccttagggcacaagtta 222  Q
    |||||  |||||||| ||||||||||||| |||||||||    
T  45628434 ttttaggttccttaatatgtgcccttaggacacaagtta 45628472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 35306683 - 35306618
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaa 123  Q
    |||||||||||||||||| |||| |||| || ||||  ||||| ||||||||||| || |||||||    
T  35306683 caaatgttaacttgtgccctcaagggcatatgttaacaaactcattatagaaatatacttatcaaa 35306618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 37238907 - 37238936
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaa 223  Q
    ||||||||||||||||||||||||||||||    
T  37238907 cttaacatgtgcccttagggcacaagttaa 37238936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 43310598 - 43310646
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgacccttgaacttatt 242  Q
    ||||||||||||||| |||||||||||||  ||||||||| || |||||    
T  43310598 cttaacatgtgccctgagggcacaagttagcatgaccctttaaattatt 43310646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 52859683 - 52859539
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||| ||||||| |||| | || || ||||  ||||| || |||||||| |||| | | | | |||||| ||||||||| |||||||||| ||     
T  52859683 caaatgttaatttgtgccctcaatgacatatgttaaataactcattgtagaaatatacgtgttataagacgtgcagtcaacttcttaaaagttaaactat 52859584  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatg 202  Q
     ||||||||| || |||| ||| | |||||   ||||||||||||    
T  52859583 catgttttccgatgcaaaattgttcattttgagttccttaacatg 52859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 53741414 - 53741346
Alignment:
Q  84 cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    ||||| |||| ||| || ||||||||||| |||||||||| ||| | || ||||||||| |||||||||    
T  53741414 cacatgttaaagaattcattatagaaatatacgtatcaaaagtcatacattcaacttcttaaaagttaa 53741346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 27918500 - 27918348
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| |||| | ||||| ||||||||||||||||||||||| | |||||||| |||||||| | ||||||| |||||||||| ||     
T  27918500 caaatgctaacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatat 27918401  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgccctta 210  Q
     || |||| |||| |||| |||||  ||||  |||||||||||||||||||||    
T  27918400 tatatttttcaatgcaaaattgctctttttggattccttaacatgtgccctta 27918348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 14138973 - 14139144
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacg 158  Q
    |||||||||||||||||||||| ||||||| |||| |||| | ||||||||||| ||||||||||  ||||| | |||| |||| |||||||||| ||      
T  14138973 aaatgttaacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatatt 14139072  T
Q  159 atgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgacc 230  Q
    || |||||||||||| | || ||| |||    |||||||||||||||||||| | |||||||||| ||||||    
T  14139073 atattttccaatacataattacttttttagggttccttaacatgtgcccttaagacacaagttaacatgacc 14139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 36989830 - 36989994
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt-aaatta 156  Q
    |||||||||||||||| | |||| ||||||| ||||| ||||| ||||| ||||| || ||| ||| |||||||| ||||||||| ||||||| ||| ||    
T  36989830 caaatgttaacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaagttcaaaata 36989929  T
Q  157 cgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
      |||||||||||| |||||||||   ||||| ||||||||||||||  ||||||| |||| |||||    
T  36989930 ttatgttttccaatgcaaagttgcactttttagattccttaacatgt--ccttaggacacaggttaa 36989994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 50297801 - 50297626
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||| |||| ||||||| |||||  |||| ||||||||||| || ||||||| | |||||| ||||||||| |||||||    ||     
T  50297801 caaatgctaacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatat 50297702  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
      ||||||||||| |||| || ||  ||||   || ||||||||||||||| |||||||||||||| |||||||||    
T  50297701 tgtgttttccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccctt 50297626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 29508720 - 29508836
Alignment:
Q  117 tatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcac 216  Q
    ||||||| |||||| | ||||||||| ||||||| || ||  |||||||||||| |||| |||||  ||||   ||||||||||||||||||||||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  217 aagttaagatgaccctt 233  Q
    ||||||| | |||||||    
T  29508820 aagttaacacgaccctt 29508836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 54997870 - 54997695
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtt---a 151  Q
    ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||||||||||| |||||||   |||||| ||||||||| |||||||   |    
T  54997870 agacaaatgttaacttgtgccatcaatggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaa 54997771  T
Q  152 aattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
     ||| ||   ||||||||| |||| |||||  |||||  || ||||||||||||||| | | |||||||||| |||||    
T  54997770 tattgcg--tttttccaatgcaaaattgctctttttaggttgcttaacatgtgccctaatgacacaagttaacatgac 54997695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 564275 - 564100
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||||||||||||| | |||| || |||| |||||||  |  ||||||||||| |||||| |||  | ||||| |  |||||| |||| ||||| |      
T  564275 caaatgttaacttgtgtcctcaagggtacatgttaaggagtttattatagaaatatacgtattaaaaattgtgcatttgacttcttaaaaattaaaatgt 564176  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
     ||||||| |||| ||||||||||  ||||| ||||||||||||||||||| |||| ||||||||| || ||||||    
T  564175 tatgttttgcaatgcaaagttgctctttttaaattccttaacatgtgccctaagggtacaagttaacataaccctt 564100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 20537466 - 20537301
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacg 158  Q
    ||||||||| ||||||| |||| |||| || ||||||||||| ||||| ||||| ||| |  ||| || ||  | ||||||||| | || ||||| ||      
T  20537466 aaatgttaatttgtgccctcaagggcatatgttaaggaactcattataaaaatatacgcactaaaagttgtatattcaacttcttagaaattaaaatatt 20537367  T
Q  159 atgttttccaatacaaagttgct-tattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    ||||||||||||||||| ||  | | |||| ||||||||||||| ||||||||||||| |||||||    
T  20537366 atgttttccaatacaaaattattattttttttattccttaacatatgcccttagggcataagttaa 20537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 42051281 - 42051181
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| |||||| ||||||||||| |||| | ||||| |||| |||||| ||||| ||||| | |||||||| |||||||| ||||||| | |||||||||    
T  42051281 ttaggcaaatgctaacttgtgccatcaaggacacatattaatgaactcattataaaaatatatgtatcaaaagtcgtgcattcaacttgttaaaagttaa 42051182  T
Q  153 a 153  Q
    |    
T  42051181 a 42051181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 1961607 - 1961702
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    |||||||||| ||||||| |||| ||||||| ||||  ||||  ||||||||||| |  ||||||| |||||||| ||||||||| ||||||||||    
T  1961607 caaatgttaatttgtgccctcaagggcacatgttaaaaaacttattatagaaatataaatatcaaaagtcgtgcattcaacttctaaaaagttaaa 1961702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 22019381 - 22019559
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaa 152  Q
    |||| |||||| ||||||||||| |||| | ||||| |||| |||||| ||||||||||| | | || |||  |||| || ||||||||| |||| | ||    
T  22019381 ttaggcaaatgctaacttgtgccctcaaggacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacattcaacttctaaaaaatgaa 22019480  T
Q  153 attacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    | ||  || |||||||||  ||| ||||   |||    || |||||||||||||||||||||||||||||| |||||||    
T  22019481 actatcatattttccaatgtaaaattgcccttttcgggtttcttaacatgtgcccttagggcacaagttaacatgaccc 22019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 24940628 - 24940792
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| |||||||| ||||||| ||||||| ||||  ||||  ||| ||||||| |   || ||| |||||||| ||||||||| |||||||||  ||     
T  24940628 caaatgctaacttgtaccttcaagggcacatgttaaa-aacttattaaagaaatataaacataaaaagtcgtgcattcaacttcttaaaagttaatatat 24940726  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
     ||||||| |||| |||| |||||  ||||  ||| |||||||||||| ||||||| |||||||||    
T  24940727 tatgtttttcaatgcaaacttgctctttttggattgcttaacatgtgctcttagggaacaagttaa 24940792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 30033547 - 30033474
Alignment:
Q  159 atgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||||||||| ||||||||||  ||||   ||||||||||| |||| |||||||||||||||| ||||||||    
T  30033547 atgttttccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagttaacatgaccct 30033474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 45250052 - 45249943
Alignment:
Q  60 aatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacga 159  Q
    |||||||||||||||| |||| |||||||  |||| || |  |||||||||||  | ||||||| |||||||| ||||||||| |||| ||||| ||  |    
T  45250052 aatgttaacttgtgccctcaagggcacatgctaagaaattttttatagaaatattcatatcaaaagtcgtgcattcaacttcttaaaatttaaaatatta 45249953  T
Q  160 tgttttccaa 169  Q
    ||||||||||    
T  45249952 tgttttccaa 45249943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 29818547 - 29818477
Alignment:
Q  131 caatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacat 201  Q
    |||||||||||| |||||||||||||  |||||||||||| |||| ||  | |||||| ||||||||||||    
T  29818547 caatcaacttcttaaaagttaaattatcatgttttccaatgcaaatttattcattttagattccttaacat 29818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 54719789 - 54719656
Alignment:
Q  59 aaatgttaacttgtgccttcaa----aggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||||||||||| ||||     ||||||| |||||||| |  ||||||||||| || ||| ||| |||||  | ||||||||| |||||||||||    
T  54719789 aaatgttaacttgtgccctcaatggctggcacatgttaaggaatttattatagaaatatacttattaaaagtcgtatagtcaacttcttaaaagttaaat 54719690  T
Q  155 tacgatgttttccaatacaaagttgcttatttta 188  Q
    ||  || |||| |||| |||| ||||| ||||||    
T  54719689 tatcatatttttcaatgcaaaattgctaatttta 54719656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 28675713 - 28675674
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  28675713 cttaacatgtgccctaagggcacaagttaacatgaccctt 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 30033660 - 30033589
Alignment:
Q  80 aaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagtta 151  Q
    ||||||||| |||||||| |  |||||||||||||||||||||| ||||| || |  |||||| ||||||||    
T  30033660 aaggcacatgttaaggaatttattatagaaataaacgtatcaaaagtcgtacatttgacttcttaaaagtta 30033589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 30666973 - 30667012
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  30666973 tccttaacttgtgcccttagggcacaagttaacatgaccc 30667012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 20574885 - 20574848
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  20574885 ttaacatgtgccctaagggcacaagttaacatgaccct 20574848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 39414516 - 39414556
Alignment:
Q  191 ttccttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  39414516 ttccttaacttgtgccctaagggcacaagttaacatgaccc 39414556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 40311791 - 40311723
Alignment:
Q  109 aataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagt 177  Q
    |||| |||||||||| |||||| | |||| |||| |||| ||||| ||  |||||||||||||||||||    
T  40311791 aatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaaatattatgttttccaatacaaagt 40311723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 40321867 - 40321799
Alignment:
Q  109 aataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagt 177  Q
    |||| |||||||||| |||||| | |||| |||| |||| ||||| ||  |||||||||||||||||||    
T  40321867 aatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaaatattatgttttccaatacaaagt 40321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 554455 - 554278
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    |||||||||||||||| | || ||||  |||||| ||||||||||| ||||||||||| | |||| ||| | |||||| ||||||| | |||||||||||    
T  554455 agacaaatgttaacttttcccatcaagagcacatgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaaat 554356  T
Q  155 tacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    ||  || ||||||||| |||| ||| | |||||  ||| |||||||||||| |||||| |||||||||| || |||||    
T  554355 tatcatattttccaatgcaaaattgttcattttggatttcttaacatgtgctcttaggacacaagttaacatcaccct 554278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 29557513 - 29557643
Alignment:
Q  102 ttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacat 201  Q
    ||||||||||| | |||||||| |||||| | | || || | |||||||||||||  ||||||||||||||||||||||| |||||   |||||||||||    
T  29557513 ttatagaaatatatgtatcaaaagtcgtgtagttaaatttttaaaagttaaattatcatgttttccaatacaaagttgctcattttgggttccttaacat 29557612  T
Q  202 gtgcccttagggcacaagttaagatgaccct 232  Q
    |||| ||||||||||||| ||| || |||||    
T  29557613 gtgctcttagggcacaagataacataaccct 29557643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 41144745 - 41144650
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    ||||||||| |||||| | |||| ||||||| ||||||||||| ||||||||||| || ||||||| |||||||| ||||||| | ||||||||||    
T  41144745 caaatgttatcttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaagttaaa 41144650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 10523677 - 10523795
Alignment:
Q  83 gcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgctt 182  Q
    |||||| ||||||||||| ||||||||||| |||||||||| |||||||| |||| |||| |||||||||| ||  |||||| |||||| ||| ||| |     
T  10523677 gcacatgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaactattatgtttaccaatataaaattgttc 10523776  T
Q  183 attttatattccttaacat 201  Q
     ||||  ||||||||||||    
T  10523777 tttttgaattccttaacat 10523795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 14547820 - 14547943
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    ||||||||||||| |||| |||| ||||||| |||||||| || ||||||||||| ||| |||||| |||||||| | || || | |||||||||||||     
T  14547820 caaatgttaacttatgccctcaagggcacatgttaaggaattccttatagaaatatacgcatcaaaagtcgtgcagttaatttattaaaagttaaattat 14547919  T
Q  158 gatgttttccaatacaaagttgct 181  Q
     || | || |||| ||||||||||    
T  14547920 catatctttcaatgcaaagttgct 14547943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 26105006 - 26105180
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||||||||||  |||| | ||||| ||||||||||  ||| ||||||| ||| || ||| |||||||| |||| |||| ||||||| |  ||     
T  26105006 caaatgctaacttgtgcactcaatgacacatgttaaggaacttattaaagaaatatacgcataaaaagtcgtgcattcaaattcttaaaagttgatatat 26105105  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
     ||||||||| || ||||||| || |||||   || |||||||||||||||||||| |||| |||| || |||||    
T  26105106 tatgttttccgatgcaaagtttctcattttgggttgcttaacatgtgcccttagggaacaaattaacataaccct 26105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 7738618 - 7738559
Alignment:
Q  53 ttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaata 112  Q
    ||||||||||||||||||||||||| ||  |||||| ||||| ||||| |||||||||||    
T  7738618 ttagacaaatgttaacttgtgcctttaagagcacatgttaagtaactcattatagaaata 7738559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 12289133 - 12289171
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccct 232  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12289133 cttaacatgtgcccttagggcacaagttaatatgaccct 12289171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 34178227 - 34178268
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  34178227 tccttaacatgtgcccttagggcacaaattaacatgaccctt 34178268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 40044897 - 40044801
Alignment:
Q  126 tcgtgcaatcaacttctcaaaagttaaattacgatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagtta 222  Q
    ||||||| ||||||||| |||| ||||| |   ||||||||||| ||||| |||||  ||||   |||||||||||||||||||| | |||||||||    
T  40044897 tcgtgcattcaacttcttaaaaattaaaattgtatgttttccaacacaaaattgctctttttgggttccttaacatgtgcccttacgacacaagtta 40044801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 9780734 - 9780697
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    |||||||||||||||||||||||||||||  |||||||    
T  9780734 cttaacatgtgcccttagggcacaagttagtatgaccc 9780697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 28735303 - 28735262
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  28735303 tccttaacttgtgccctaagggcacaagttaacatgaccctt 28735262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 29429739 - 29429776
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccc 231  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  29429739 cttaacatgtgccctaagggcacaagttaacatgaccc 29429776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 43340278 - 43340399
Alignment:
Q  60 aatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacga 159  Q
    |||||| | |||| || |||||| ||||| ||||||||||  ||| ||||||| | | || ||| || || || ||||||||| |||||||||  ||  |    
T  43340278 aatgtttatttgtaccctcaaagacacatgttaaggaacttattaaagaaatataagcataaaaagttgtacattcaacttcttaaaagttaatatatta 43340377  T
Q  160 tgttttccaatacaaagttgct 181  Q
    ||||||||||| ||||||||||    
T  43340378 tgttttccaatgcaaagttgct 43340399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 10431554 - 10431582
Alignment:
Q  195 ttaacatgtgcccttagggcacaagttaa 223  Q
    |||||||||||||||||||||||||||||    
T  10431554 ttaacatgtgcccttagggcacaagttaa 10431582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 6469713 - 6469543
Alignment:
Q  59 aaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattacg 158  Q
    ||||| |||||||| || |||| |||| || |||||||| || ||||||||||| |  ||| ||| |||||||| ||||||||| |||| ||||||||      
T  6469713 aaatgctaacttgtaccctcaatggcatatgttaaggaattcattatagaaatatatttattaaaagtcgtgcagtcaacttcttaaaaattaaattatc 6469614  T
Q  159 atgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
    ||||||| |||| |||||||||| |||||   ||| ||||||| |||||||| |||| ||||||| |||||    
T  6469613 atgtttttcaatgcaaagttgctcattttcggttctttaacatatgcccttaaggcataagttaacatgac 6469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 30249138 - 30249261
Alignment:
Q  55 agacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaat 154  Q
    ||||||||| ||||||||||| | || | ||||| ||||||||||| ||||||||||| | ||||||||  ||||||| ||||||||| ||||||||||     
T  30249138 agacaaatgctaacttgtgcccttaatgacacatgttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaa 30249237  T
Q  155 tacgatgttttccaatacaaagtt 178  Q
    ||  ||||||| |||| |||||||    
T  30249238 tattatgtttttcaatgcaaagtt 30249261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 3787425 - 3787596
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaattac 157  Q
    |||||| ||| ||||||| |||| | ||||| |||| |||||  ||||| ||||| |||||| ||| ||| | || |||| |||| |||||||||| ||     
T  3787425 caaatgctaatttgtgccctcaaggacacatgttaaagaacttattataaaaatatacgtattaaaagtcatacattcaatttcttaaaagttaaactat 3787524  T
Q  158 gatgttttccaatacaaagttgcttattttatattccttaacatgtgcccttagggcacaagttaagatgac 229  Q
     |||||||| |||  ||| |||||  ||||  |||| |||||||||||||||||| || ||||||| |||||    
T  3787525 catgttttctaatgtaaaattgctctttttgaattcattaacatgtgcccttaggacataagttaacatgac 3787596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 16126217 - 16126156
Alignment:
Q  51 agttagacaaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaata 112  Q
    ||||||||||||||||||||||||| |||| || |||| |||||||| || ||||| |||||    
T  16126217 agttagacaaatgttaacttgtgccctcaatggtacatgttaaggaattcattataaaaata 16126156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 7509670 - 7509631
Alignment:
Q  194 cttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  7509670 cttaacatgtgcccttagggcacaagttagcatgaccctt 7509631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 11752978 - 11752928
Alignment:
Q  183 attttatattccttaacatgtgcccttagggcacaagttaagatgaccctt 233  Q
    |||||| | |||||||| |||||||||||| |||||||||| |||||||||    
T  11752978 attttaaactccttaacttgtgcccttaggacacaagttaacatgaccctt 11752928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 15528356 - 15528318
Alignment:
Q  192 tccttaacatgtgcccttagggcacaagttaagatgacc 230  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  15528356 tccttaacttgtgcccttagggcacaagttaacatgacc 15528318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 25407915 - 25407886
Alignment:
Q  193 ccttaacatgtgcccttagggcacaagtta 222  Q
    ||||||||||||||||||||||||||||||    
T  25407915 ccttaacatgtgcccttagggcacaagtta 25407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 29285988 - 29286061
Alignment:
Q  80 aaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    |||||| || |||| |||||| ||||||||||| |||||| |||  ||||||| ||||||||| |||| |||||    
T  29285988 aaggcaaatgttaatgaactcattatagaaatatacgtataaaaaatcgtgcattcaacttcttaaaatttaaa 29286061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 3100 - 3031
Alignment:
Q  84 cacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaagttaaa 153  Q
    ||||| ||||||||||| ||||||| ||| | |||||||| ||| |||| ||||||||| ||||||||||    
T  3100 cacatgttaaggaactcattatagatatatatgtatcaaaagtcatgcattcaacttcttaaaagttaaa 3031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 4512 - 4601
Alignment:
Q  58 caaatgttaacttgtgccttcaaaggcacatcttaaggaactcgttatagaaataaacgtatcaaacgtcgtgcaatcaacttctcaaaa 147  Q
    |||||| ||||||||||| |||| | ||||| |||||  |||| ||||||||||| || |||||||   |||||| ||||||||| ||||    
T  4512 caaatgctaacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaa 4601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 240609 - 240568
Alignment:
Q  182 tattttatattccttaacatgtgcccttagggcacaagttaa 223  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  240609 tattttagattgcttaacatgtgccctaagggcacaagttaa 240568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University