View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_10 (Length: 362)
Name: NF18104_low_10
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 35887123 - 35887467
Alignment:
| Q |
21 |
ttgagttggaagagggccacataatgttgaggaagaaggtttcttgcacgataagtttaaaatctgagttctataattggaaattttcaaatat------ |
114 |
Q |
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| T |
35887123 |
ttgagttggaagagggccacataatgttgaggaagaaggtttcttgcacgataagtttaaaatatgagttctataattggaaattttcaaataatataat |
35887222 |
T |
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| Q |
115 |
-------acttacacacgtagtgggtgaccatttaattatggatttgattgatattgcagtcagagttgatgtcctaatataattcgaagatttattttt |
207 |
Q |
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| T |
35887223 |
tggaagaactta-actcgtagtgggtgaccatttaattatggatttgattgatattgcagtcagagttgatgtcttaatataattggaagatttattttt |
35887321 |
T |
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| Q |
208 |
cttcacaaaaaatctcttaatatggacactaaagagtatgcagaccgaaaattttaaagagtttagataaattcgccaatcataattatcctcttcttat |
307 |
Q |
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| T |
35887322 |
cttcacaaaaaatctcttaatatggacactaaagagtatgccaaccgaaaattttagagagtttagataaattcgccaatcataaatatcctcttcttat |
35887421 |
T |
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| Q |
308 |
tctcaacaaaaacaccttgaaatgatatgaaccatttctgtctttt |
353 |
Q |
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| T |
35887422 |
tctcaacaaaaacaccttgaaatgatatgaataatttctatctttt |
35887467 |
T |
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