View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_13 (Length: 328)
Name: NF18104_low_13
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 16961743 - 16962041
Alignment:
| Q |
18 |
gattgtgtgcattttgttctttaagttttctgtcagaacctttctgaaaaatgaaaataagaaaagtaaaatatcatagattagagttagagacttaaac |
117 |
Q |
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| T |
16961743 |
gattgtgtgcattttgttctttaagttttctgtcagaacctttctgaaaaatgaaaataagaaaagtaaaatatcatagattagagttagagacttaaac |
16961842 |
T |
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| Q |
118 |
atgaagtactgaatgagtgaaattacatataatttgttcttctaaccttgcatggaattaatggaatgctatatccactaacttttggattgagattatt |
217 |
Q |
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| T |
16961843 |
atgaagtactgaatgagtgaaattacatataatttgttcttctaaccttggatggaattaatggaatgctatatccactaacttttggattgagattatt |
16961942 |
T |
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| Q |
218 |
gtccaacaaaatgttctcaatcttaatgttgtttccatatatgccaggattaactcctgtatgtaggaattgaattcctctagcaatgcctatgatgat |
316 |
Q |
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| T |
16961943 |
gtccaacaaaatgttctcaatctttatgttgtttccatatatgccaggattaactcctgtatgtaagaattgaattcctctagcaatgcctatgatgat |
16962041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 24827821 - 24827682
Alignment:
| Q |
177 |
aatggaatgctatatccactaacttttggattgagattattgtccaacaaaatgttctcaatcttaatgttgtttccatatatgccaggattaactcctg |
276 |
Q |
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|||||||| || |||||||||||||||| ||| ||| ||| || |||||||| ||||||||||| | ||||| ||| |||| |||||| |||||||| |
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| T |
24827821 |
aatggaattctgtatccactaacttttgcattaagactatcatctaacaaaatattctcaatcttgaaattgttgccaaatattccaggagcaactcctg |
24827722 |
T |
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| Q |
277 |
tatgtaggaattgaattcctctagcaatgcctatgatgat |
316 |
Q |
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| T |
24827721 |
tatgtaagaactgaactcctcttgcaattcctatgctgat |
24827682 |
T |
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