View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_14 (Length: 290)
Name: NF18104_low_14
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_14 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 18342724 - 18342988
Alignment:
| Q |
15 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342724 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
18342823 |
T |
|
| Q |
115 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342824 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
18342923 |
T |
|
| Q |
215 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
279 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342924 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
18342988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 48288664 - 48288862
Alignment:
| Q |
15 |
aaatttaactgtctcaattctcgggctattgcggaaaaaat----tcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatca |
110 |
Q |
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||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48288664 |
aaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttttgaatttccttctttatcaatgagaaccgccgcattatcatca |
48288763 |
T |
|
| Q |
111 |
tactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactg |
210 |
Q |
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||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
48288764 |
tactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatcacttcagatctttctaaagatgaatttgatactc |
48288858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 36840497 - 36840761
Alignment:
| Q |
15 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
115 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
215 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
279 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
36840761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 164630 - 164376
Alignment:
| Q |
25 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
124 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
125 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
225 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattc |
164376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 14249096 - 14249350
Alignment:
| Q |
25 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
125 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
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| Q |
225 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattc |
14249350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 993 - 732
Alignment:
| Q |
15 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
114 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||| ||| || ||||| |||||||| |
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|
| T |
993 |
aaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggcagcattgtcatcatatc |
894 |
T |
|
| Q |
115 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
214 |
Q |
| |
|
|||||| || || || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| |
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| T |
893 |
gtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttc |
794 |
T |
|
| Q |
215 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatga |
276 |
Q |
| |
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||||| |||||||||| || ||||||||||| |||||| || ||||||||||||||||||| |
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|
| T |
793 |
cttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcctatga |
732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 46699127 - 46699238
Alignment:
| Q |
168 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
268 |
ctcctatgattc |
279 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46699227 |
ctcctatgattc |
46699238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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