View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18104_low_2 (Length: 728)
Name: NF18104_low_2
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 387 - 710
Target Start/End: Original strand, 43172039 - 43172362
Alignment:
| Q |
387 |
aaaataaggcaaagaagaagtacaaacgcaattcagaaaattcagttgggaagcttctcattgtaaaataaaataaagggtgaaagaatttaatatgtag |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43172039 |
aaaataaggcaaagaagaagtacaaacgcaattcagaaaattcagctgggaagcttctcattgtaaaataaaataaagggtgaaagaatttaatatgtag |
43172138 |
T |
|
| Q |
487 |
aagaacttgactcacagaacttatgaagattaaaatgaatatcatcattgaatggttcgtctagttcataaatcttgtgaagctcaaaaactaaaccagc |
586 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43172139 |
aagaacttgactcacagaactcatgaagattaaaatgaatatcatcattgaatggttcgtctagttcataaatcttgtgaagctcaaaaactaaaccagc |
43172238 |
T |
|
| Q |
587 |
aaagttttaacatcttgtatcagattgagtgtgtaacaagttttcaagacatatgacaggacacttgctacgtatagtgtttctactttctttcgctctt |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43172239 |
aaagttttaacatcttgtatcagattgagtgtgtaacaagttttcaagacatatgacaggacacttgctacgtatagtgtttctactttctttcgctctt |
43172338 |
T |
|
| Q |
687 |
ccttttattgttcatgcccagaac |
710 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43172339 |
ccttttattgttcatgcccagaac |
43172362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 43171433 - 43171598
Alignment:
| Q |
14 |
catcacaaggtaaagtggtacaaagagccatggcaaagatgaaaatggtcaccaaagtaagagaattggttgccattgcttaaatacaggaggaaactat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43171433 |
catcaaaaggtaaagtggtacaaagagccatggcaaagatgaaaatggtcaccaaagtaagagaattggttgccattgcttaaatacaggaggaaactat |
43171532 |
T |
|
| Q |
114 |
tgagaaattatatggatgtgatgtgataggtttctggta-ttggaacaatgagatatatatacacg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
43171533 |
tgagaaattatatggatgtgatgtgataggtttctggtatttggaacaacgagatatatatacacg |
43171598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 176 - 390
Target Start/End: Original strand, 43171626 - 43171829
Alignment:
| Q |
176 |
acgaagaaataagttagcaaacctactctcccacttgctttttaccaaaaccctaaatctttcatattaacaactacttaattgtgagggtactattgta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||| |||||||||||||||||||| |
|
|
| T |
43171626 |
acgaagaaataagttagcaaacctactctcccacttgctttctaccaaaaccctaattgtgaggg---------tact--attgtgagggtactattgta |
43171714 |
T |
|
| Q |
276 |
atttacatatccctttaatagttaatgtttccttactttcatttacttttcgtttttcatnnnnnnncaaacaaatattaaggaacacaaagaatgcttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43171715 |
atttacatatccctttaatagttaatgtttccttactctcatttacttttcgtttttcataaaaaaacaaacaaatattaaggaacacaaagaatgcttt |
43171814 |
T |
|
| Q |
376 |
gcttagtagaaaaaa |
390 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43171815 |
gcttagtagaaaaaa |
43171829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 574 - 710
Target Start/End: Original strand, 43162461 - 43162600
Alignment:
| Q |
574 |
aaactaaaccagcaaagttttaacatcttgtatcagattgagtgtgtaacaagttttcaag---acatatgacaggacacttgctacgtatagtgtttct |
670 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || | |||| || |||||||||||| | |||| ||||| |
|
|
| T |
43162461 |
aaactaaaccagcaaagttttaacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttct |
43162560 |
T |
|
| Q |
671 |
actttctttcgctcttccttttattgttcatgcccagaac |
710 |
Q |
| |
|
||| | ||| |||||||||| ||||||||||| |||||| |
|
|
| T |
43162561 |
actctatttgactcttcctttcattgttcatgctcagaac |
43162600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 43161294 - 43161353
Alignment:
| Q |
14 |
catcacaaggtaaagtggtacaaagagccatggcaaagatgaaaatggtcaccaaagtaa |
73 |
Q |
| |
|
||||||| |||||||||| | |||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
43161294 |
catcacatggtaaagtgggagaaagagtcatagcaaagatgaaaatagtcaccaaagtaa |
43161353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 710
Target Start/End: Original strand, 19576587 - 19576696
Alignment:
| Q |
604 |
tatcagattgagtgtgtaacaagttttcaaga---catatgacaggacacttgctacgtatagtgtttctactttctttcgctcttccttttattgttca |
700 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||| || ||||||| | | ||||||||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
19576587 |
tatcagattgagtgtgaaacaagttttcaagttctcttatggcaagacactttcagcttatagtgtttctactttgtttgactcttcctttcattgttca |
19576686 |
T |
|
| Q |
701 |
tgcccagaac |
710 |
Q |
| |
|
||| |||||| |
|
|
| T |
19576687 |
tgctcagaac |
19576696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 36260613 - 36260685
Alignment:
| Q |
213 |
ctttttaccaaaaccctaaatctttcatattaacaactacttaattgtgagggtactattgtaatttacatatc |
286 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||||||||| | || ||||||||||| | |||||||||| |
|
|
| T |
36260613 |
ctttttaccaaaactctaaatctttcttcttaacaactacttaaatatg-gggtactattgcactttacatatc |
36260685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 6026904 - 6026973
Alignment:
| Q |
214 |
tttttaccaaaaccctaaatctttcatattaacaactacttaattgtgagggtactattgtaatttacat |
283 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||| || | |||||||| || |||||||||||| |
|
|
| T |
6026904 |
tttttaccaaaagctctaatctttcattttaacaactactaaaatatgagggtagtagtgtaatttacat |
6026973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University