View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_3 (Length: 661)
Name: NF18104_low_3
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 637
Target Start/End: Original strand, 28349788 - 28350411
Alignment:
| Q |
16 |
catagggtgaagttgacatcatgcatagtcaagcatcaaatgtttcacacggcaacatatatttacacacatcacgagccatgactttaatccaaggcag |
115 |
Q |
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| T |
28349788 |
catagggtgaagttgacatcatgcatagtcaagcatcaaatgtttcacacggcaacatatatttacacacatcacgagccatgacttcaatccaaggcag |
28349887 |
T |
|
| Q |
116 |
ctagtaataatgtgccacatggaagacattggcatgaaacaacaacaaaggaagaagtcatgaaacatggttcttaaagggttccaaagcatggaatttt |
215 |
Q |
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| T |
28349888 |
ctagtaataatgtgccacatggaagacattggcatgaaacaacaacaaaggaagaagtcatgaaacatggttcttaaagggttccaaagcatggaatttt |
28349987 |
T |
|
| Q |
216 |
ccttacctaaaaatcaaaaacggaaaattcaaccaaa-cataagtctcatgctgatggcgcaaagtgtgggagagtttaatttaatatagttatgttaat |
314 |
Q |
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| T |
28349988 |
ccttacctaaaaatcaaaaacggaaaattcaaccaaaacataagtctcatgctgatggcgcaaagtgtgggagagtttaatttaatatagttatgttaat |
28350087 |
T |
|
| Q |
315 |
tagtgtgatgacatttattttaggggttatcgggattgcaaaacaagagttatcaaacacaaagtcaaataatgttagatttggagcgtgacatccataa |
414 |
Q |
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| T |
28350088 |
tagtgtgatgacatttattttaggggttatcgggattgcaaaacaagagttgtcaaacacaaagtcaaataatgttagatttggagcgtgacatccataa |
28350187 |
T |
|
| Q |
415 |
aaaattactaacattaaacaaataactttatagtaacaagaaaggaagagctggaaaccaaggacacattcctatttgactacataaaacaaacaataaa |
514 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28350188 |
aatattactaacattaaacaaataactttatagtaacaagaaaggaagagctggaaagcaaggacacattcctatttgactacataaaacaaacaataaa |
28350287 |
T |
|
| Q |
515 |
aacagt-ttgtttgagatattaattttcgaccaagtctataatatataaatgagacaagttttgtatcacgcataaatttannnnnnncaatatatcaag |
613 |
Q |
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|||| | |||||| ||||| |||||||||||||||| ||||||||||||||||||||| | ||| |||| ||| ||| ||| |||||||||||| |
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| T |
28350288 |
aacaatattgtttcagatactaattttcgaccaagtatataatatataaatgagacaaatcttgcatcatgcacaaacttatttttatcaatatatcaag |
28350387 |
T |
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| Q |
614 |
attcttttatgtcttatatatgaa |
637 |
Q |
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|||||||| ||| ||||||||||| |
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| T |
28350388 |
attcttttctgttttatatatgaa |
28350411 |
T |
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