View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_4 (Length: 442)
Name: NF18104_low_4
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 43796576 - 43796171
Alignment:
| Q |
20 |
ctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttcttgatcggtttctttatgccaccaatttcttctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43796576 |
ctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttcttgatcggtttctttatgccaccaatttcttctt |
43796477 |
T |
|
| Q |
120 |
catcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43796476 |
catcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggctttttaccttttgtggatgatgatttagtttcttcttaagaaa |
43796377 |
T |
|
| Q |
220 |
gtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaaacattgcactgatgagtagattcttgaacagaagcctcatcctta |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| || | || |||| | | |||| ||||||||||| |
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| T |
43796376 |
gtgagatctccggtggccacccaatgcttttccgttgctaaaagtttttccacagatattacattcgtg------ttctgggatagaaacctcatcctta |
43796283 |
T |
|
| Q |
320 |
gcatcatcttcatcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcatgggtattctcatgatcatgcttatgatctttatcaa |
419 |
Q |
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|||||||||||||||||||||||||||| | ||||| || ||||||||| ||||||||| ||| |||||| | |||||||| ||||||||||| |
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| T |
43796282 |
gcatcatcttcatcacttgatagagaactaaaagacctctttatcctcttttccgactcttcacaggtgttctcaaaaccatgcttactatctttatcaa |
43796183 |
T |
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| Q |
420 |
aactagccctat |
431 |
Q |
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|||||||||||| |
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| T |
43796182 |
aactagccctat |
43796171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 133 - 417
Target Start/End: Complemental strand, 43796187 - 43795900
Alignment:
| Q |
133 |
atcaaaactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccgg |
232 |
Q |
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|||||||||||||||||||| | ||||||||||||| | |||| || |||||||||||| | ||||||| |||||||| ||||||||||||||||| ||| |
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| T |
43796187 |
atcaaaactagccctattataactaccttgtattgagagaggggtttttaccttttgtgaacgatgattaagtttctttttaagaaagtgagatctgcgg |
43796088 |
T |
|
| Q |
233 |
tggccacccaatgcttttccattgctaaaagtttttccacaaacattgcactgatgagtagattcttgaacagaagcctcatccttag---catcatctt |
329 |
Q |
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|| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||| |||||||||||| |||| |||| |
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| T |
43796087 |
tgaccgcccaacgcttttccattgctaaaagtttttccacaaacattgcattgatgtgtagattcctgaatagaaacctcatccttagtatcatcttctt |
43795988 |
T |
|
| Q |
330 |
catcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcatgggtattctcatgatcatgcttatgatctttatc |
417 |
Q |
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| T |
43795987 |
catcacttgatagtgaagaagaagaccttttcatcctcttttctgaatcttcgtagggtttctcgtaaccatgcttatgatctttatc |
43795900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 28847348 - 28847414
Alignment:
| Q |
21 |
tcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttctt |
87 |
Q |
| |
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||||||||||||| ||| |||||||| |||||||||| |||||||| ||| |||||||| ||||||| |
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| T |
28847348 |
tcatgtgaccataaaaaacattcttgattggaaacttgttctcgcaaatataacaagtttgtttctt |
28847414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 28847477 - 28847559
Alignment:
| Q |
192 |
gatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaa |
274 |
Q |
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|||||||||| | ||| |||| |||||||||||||| ||||| ||||| |||| |||||||||||| ||||| || |||||| |
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| T |
28847477 |
gatgatgattacgcttcatcttgagaaagtgagatcttcggtgaccacctaatgtttttccattgctgaaagtcttaccacaa |
28847559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 29131089 - 29130956
Alignment:
| Q |
138 |
aactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggcc |
237 |
Q |
| |
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|||| ||| |||||||||| ||||||||| |||||| || |||||||| | || ||||| ||||| | |||||||||||||||||| ||||| || |
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| T |
29131089 |
aacttgccatattattattttattgtattgagaaaggggtttccaccttttgggaataatgatgaagtttatgcttaagaaagtgagatcttcggtgacc |
29130990 |
T |
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| Q |
238 |
acccaatgcttttccattgctaaaagtttttcca |
271 |
Q |
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| T |
29130989 |
attcaatgcttttccgttgttaaatttttttcca |
29130956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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