View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_5 (Length: 409)
Name: NF18104_low_5
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 11333986 - 11333605
Alignment:
| Q |
12 |
catcatcacgatacagaacacgacatgcacgaagaaaacaatgtagcgttactcttcacatcagacggtggagcaacgctaaacggtcttctagaaaatg |
111 |
Q |
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| T |
11333986 |
catcatcacgatacagaacacgacatgcacgaagaaaacaatgtagcgttactcttcacatcagacggtggagcaacgctaaacggtcttctagaaaatg |
11333887 |
T |
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| Q |
112 |
aatcgacaacgttgacaacgacggaggaagaggaggagtcattgtcagtgatgaggtgtccggtgatggatcaagggttggtgaggaaagcaatgaggag |
211 |
Q |
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| T |
11333886 |
aatcgacaacgttgacaacgacggaggaagaggaggagtcattgtcagtgatgaagtgtccggtgatggatcaagggttggtgaggaaagcaatgaggag |
11333787 |
T |
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| Q |
212 |
gaaggggaatgatgaagagagtgaagagagatgggtgagttattcagaagttgttgaagagaccaagaaggaaattatggaggaagttaatagtacttgt |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
11333786 |
gaagaggaatgatgaagagagtgaagagagatgggtgagttattcagaagttgttgaagaaacgaagaaggaaattatggaggaagttaatagtacttgt |
11333687 |
T |
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| Q |
312 |
tttggatttgaaacgacgtcgttttttgggtctttgagtttgaagttggatcatgatgggatattgaatgcttggtctgata |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11333686 |
tttggatttgaaacgacgtcgttttttgggtctttgagtttgaagttggatcatgatgggatattgaatgcttggtctgata |
11333605 |
T |
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