View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18104_low_7 (Length: 398)

Name: NF18104_low_7
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18104_low_7
NF18104_low_7
[»] chr4 (22 HSPs)
chr4 (13-121)||(26123344-26123452)
chr4 (186-379)||(26123065-26123279)
chr4 (24-120)||(36184616-36184712)
chr4 (29-84)||(35964890-35964945)
chr4 (24-86)||(28834159-28834221)
chr4 (16-49)||(4821071-4821104)
chr4 (20-84)||(22611304-22611368)
chr4 (29-77)||(27593743-27593791)
chr4 (29-120)||(49410306-49410398)
chr4 (20-84)||(53811149-53811213)
chr4 (21-83)||(38166155-38166217)
chr4 (23-120)||(23100762-23100859)
chr4 (24-84)||(37188504-37188565)
chr4 (16-84)||(4142672-4142740)
chr4 (29-120)||(4643941-4644033)
chr4 (17-101)||(21662541-21662625)
chr4 (17-101)||(21671305-21671389)
chr4 (20-84)||(21686166-21686230)
chr4 (20-84)||(32766635-32766699)
chr4 (20-84)||(33921175-33921239)
chr4 (20-84)||(43510317-43510381)
chr4 (16-120)||(49072665-49072769)
[»] chr7 (12 HSPs)
chr7 (24-120)||(43369682-43369778)
chr7 (20-103)||(19404681-19404764)
chr7 (29-84)||(35261405-35261460)
chr7 (29-84)||(13592423-13592478)
chr7 (20-84)||(13796853-13796917)
chr7 (207-252)||(23425465-23425510)
chr7 (20-49)||(46244176-46244205)
chr7 (29-120)||(2843155-2843247)
chr7 (29-84)||(6558984-6559040)
chr7 (29-120)||(14627793-14627885)
chr7 (20-84)||(19296973-19297037)
chr7 (29-120)||(35667146-35667238)
[»] scaffold0136 (1 HSPs)
scaffold0136 (20-120)||(34686-34786)
[»] scaffold0347 (1 HSPs)
scaffold0347 (16-103)||(6112-6199)
[»] chr5 (14 HSPs)
chr5 (16-103)||(15571567-15571654)
chr5 (29-120)||(11768075-11768164)
chr5 (16-62)||(19100539-19100585)
chr5 (20-103)||(6216979-6217062)
chr5 (21-120)||(11192443-11192542)
chr5 (20-114)||(13468678-13468772)
chr5 (22-83)||(3166465-3166526)
chr5 (17-66)||(9762374-9762423)
chr5 (207-252)||(30298149-30298194)
chr5 (215-255)||(6445874-6445914)
chr5 (20-84)||(13007329-13007393)
chr5 (29-120)||(26578325-26578417)
chr5 (29-120)||(41184354-41184446)
chr5 (29-84)||(42579997-42580053)
[»] chr2 (15 HSPs)
chr2 (20-103)||(29279495-29279578)
chr2 (28-77)||(44881656-44881705)
chr2 (20-84)||(7646589-7646653)
chr2 (20-84)||(31128705-31128769)
chr2 (21-84)||(7448358-7448421)
chr2 (36-118)||(26025331-26025414)
chr2 (29-87)||(37614040-37614098)
chr2 (29-83)||(39641773-39641827)
chr2 (20-84)||(4778864-4778928)
chr2 (29-120)||(9986256-9986348)
chr2 (29-84)||(21570322-21570378)
chr2 (207-255)||(32913181-32913229)
chr2 (29-84)||(32913351-32913407)
chr2 (20-84)||(36943046-36943110)
chr2 (20-96)||(37876531-37876607)
[»] chr1 (13 HSPs)
chr1 (29-120)||(39987464-39987555)
chr1 (29-83)||(41081618-41081672)
chr1 (29-120)||(18569225-18569316)
chr1 (13-84)||(32873781-32873852)
chr1 (20-103)||(44915724-44915807)
chr1 (21-81)||(19052239-19052299)
chr1 (19-73)||(50616598-50616652)
chr1 (19-73)||(50624425-50624479)
chr1 (24-65)||(48809146-48809187)
chr1 (20-84)||(14872743-14872807)
chr1 (20-84)||(21947542-21947606)
chr1 (29-85)||(39927469-39927525)
chr1 (19-103)||(41911890-41911974)
[»] scaffold0014 (1 HSPs)
scaffold0014 (25-95)||(21808-21878)
[»] chr6 (7 HSPs)
chr6 (16-84)||(31852113-31852181)
chr6 (16-83)||(1704052-1704119)
chr6 (53-120)||(33543561-33543628)
chr6 (21-103)||(9380106-9380188)
chr6 (20-84)||(31296922-31296986)
chr6 (20-84)||(33053092-33053156)
chr6 (20-84)||(34018662-34018726)
[»] chr8 (16 HSPs)
chr8 (16-103)||(27110383-27110470)
chr8 (29-84)||(33298969-33299024)
chr8 (20-78)||(33342555-33342614)
chr8 (16-77)||(36533018-36533079)
chr8 (21-118)||(12169334-12169431)
chr8 (21-118)||(12413762-12413859)
chr8 (19-120)||(35812739-35812840)
chr8 (29-78)||(39153057-39153106)
chr8 (29-86)||(43192261-43192318)
chr8 (20-84)||(3673544-3673608)
chr8 (23-103)||(7198120-7198200)
chr8 (20-120)||(12184356-12184456)
chr8 (20-120)||(12428784-12428884)
chr8 (20-84)||(14544825-14544889)
chr8 (20-84)||(20553163-20553227)
chr8 (20-96)||(23230734-23230810)
[»] chr3 (12 HSPs)
chr3 (17-84)||(40317457-40317524)
chr3 (21-103)||(30293411-30293493)
chr3 (29-120)||(31794139-31794230)
chr3 (29-84)||(36734607-36734662)
chr3 (29-84)||(46178673-46178728)
chr3 (207-257)||(24396607-24396657)
chr3 (22-103)||(20464896-20464977)
chr3 (16-84)||(7448834-7448902)
chr3 (16-84)||(7456976-7457044)
chr3 (29-120)||(12116166-12116258)
chr3 (20-84)||(21431713-21431777)
chr3 (20-84)||(52923041-52923105)
[»] scaffold0027 (1 HSPs)
scaffold0027 (34-67)||(4687-4720)
[»] scaffold0311 (1 HSPs)
scaffold0311 (29-120)||(8762-8854)
[»] scaffold0017 (1 HSPs)
scaffold0017 (20-84)||(32671-32735)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 26123452 - 26123344
Alignment:
Q  13 aatatgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatc 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  26123452 aatatatctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatttgcaacattgacgcacaagtcattcattgaagagccgatc 26123353  T
Q  113 tttcaataa 121  Q
    |||||||||    
T  26123352 tttcaataa 26123344  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 379
Target Start/End: Complemental strand, 26123279 - 26123065
Alignment:
Q  186 taaagtcatgctcaaacaataaaatcataaagaaaaaacctaggtctatgaaaaactcacttattt------------------aaatatatgaagtgag 267  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||                  |||||||||||| |||    
T  26123279 taaagtcatgctcaaacgataaaatcataaggaaaaaacctaggtctatgaaaaactcacttatttaaattgaaatagagaaaaaaatatatgaagagag 26123180  T
Q  268 atgannnnnnnggtt-caaaagttgaccaaaaccctcctcagttaagaaaatggaagagtaaacct--nnnnnnnnncgattcacaattgcttattattc 364  Q
    ||||        ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||           |||||||||||||||||||||||    
T  26123179 atgattttttttgtttcaaaagttgaccaaaaccctcctcagttatgaaaatggaagagcaaacctacaaaaaaaaacgattcacaattgcttattattc 26123080  T
Q  365 aataaatgtccacaa 379  Q
    |||||||||||||||    
T  26123079 aataaatgtccacaa 26123065  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 36184712 - 36184616
Alignment:
Q  24 aaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||| ||||||||||| |||||||| |||||| | |||||||| ||||| |||| |||||||  || ||||| |||||| | ||||||||||||||    
T  36184712 aaatagtatgataaaatcaaagtgaccataatatttatgcctcctgatctacaacgttgacaccaaaatcattgattgaataaccgatctttcaata 36184616  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 35964890 - 35964945
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||| |||||    
T  35964890 atatgataaaattaaagtgactgaaatactcatgcctccggatctgcaacgttgac 35964945  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 28834159 - 28834221
Alignment:
Q  24 aaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacac 86  Q
    ||||||||||||||||||||||||||   |||| ||||| |||||||||| |||| |||||||    
T  28834159 aaataatatgataaaattaaagtgaccggaatagtcatgtctccggatctacaacgttgacac 28834221  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 4821104 - 4821071
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgac 49  Q
    ||||||||||||||||||||||||||||||||||    
T  4821104 atgtctacaaataatatgataaaattaaagtgac 4821071  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 22611368 - 22611304
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  22611368 ctacaaataatatgataaaacttaagtcaccgaaatactcatgcttccggatctgcaacgttgac 22611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 27593743 - 27593791
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaa 77  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||||    
T  27593743 atatgataaaattaaagtgacaggaatactcatggctccagatctgcaa 27593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 49410398 - 49410306
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatg-cctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||||||||||||||||||  |||| ||| | |||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  49410398 atatgataaaattaaagtgacaggaatattcacggcctccggatctgcaacgttgacgcccaaatctttgattgaataatcgatctttcaata 49410306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 53811213 - 53811149
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  53811213 ctacaaataatatgataaaacttaagtcaccgaaatactcatgcttccggatctgcaacgttgac 53811149  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 38166155 - 38166217
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga 83  Q
    |||||||||||| ||||||||||| | |  | |||||||||| ||||||||||||||| ||||    
T  38166155 tacaaataatattataaaattaaaatcaacagaatactcatgtctccggatctgcaacgttga 38166217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 23100859 - 23100762
Alignment:
Q  23 caaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||| ||||||| ||||   ||||| |||| |  |||||||||||| ||||||| ||| ||||| |||||| |   ||||||||||||    
T  23100859 caaataatatgatacaattaaattgaccgaaatacccatgacatcggatctgcaactttgacactcaaatcattgattgaataattgatctttcaata 23100762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 37188504 - 37188565
Alignment:
Q  24 aaataatatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgac 84  Q
    |||| ||||||||||||||||||||||  ||||  ||| ||||||||||||||||| |||||    
T  37188504 aaattatatgataaaattaaagtgacaggaatatccatggcctccggatctgcaacgttgac 37188565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 4142672 - 4142740
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||||| | |||| ||   ||||||||||  || ||||||||||| |||||    
T  4142672 atgtctacaaataatatgataaaacttaagtcaccgaaatactcatgtttctggatctgcaacgttgac 4142740  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 4644033 - 4643941
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatg-cctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||| ||||   |||| ||||| |||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  4644033 atatgataaaattaaattgaccggaatattcatgacctccggatctgcaactttgacgcccaaatctttgattgaataatcgatctttcaata 4643941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 21662625 - 21662541
Alignment:
Q  17 tgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattg 101  Q
    |||||||||||||||||||||||   |||| ||   ||||| ||||| |||||||||||||| ||||| | ||| ||||| ||||    
T  21662625 tgtctacaaataatatgataaaacctaagtcaccgaaatacccatgcttccggatctgcaacgttgacgctcaaatcattgattg 21662541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 21671389 - 21671305
Alignment:
Q  17 tgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattg 101  Q
    |||||||||||||||||||||||   |||| ||   ||||| ||||| |||||||||||||| ||||| | ||| ||||| ||||    
T  21671389 tgtctacaaataatatgataaaacctaagtcaccgaaatacccatgcttccggatctgcaacgttgacgctcaaatcattgattg 21671305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 21686166 - 21686230
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||   || | || | ||||||||||| |||||||||||||| |||||    
T  21686166 ctacaaataatatgataaaacctaaatcaccaaaatactcatgcttccggatctgcaacgttgac 21686230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 32766699 - 32766635
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||  ||||||||||||||||||||    
T  32766699 ctacaaataatatgataaaacttaagtcaccgaaatacccatgtttccggatctgcaacattgac 32766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 33921239 - 33921175
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||  |||| ||   ||||| ||||| |||||||||||||| |||||    
T  33921239 ctacaaataatatgataaaatctaagtcactgaaatacccatgcttccggatctgcaacgttgac 33921175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 43510381 - 43510317
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| || |||||||||||||||||    
T  43510381 ctacaaataatatgataaaacttaagtcaccgaaatacccatgcttcaggatctgcaacattgac 43510317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 49072665 - 49072769
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatcttt 115  Q
    |||||||||||||||| |||||||| |||||||    |||| | ||| ||| |||| |||||| |||||||  || ||||| |||||| ||  |||||||    
T  49072665 atgtctacaaataatacgataaaatgaaagtgattggaatatttatgtctcaggatatgcaacgttgacacctaaatcattaattgaatagttgatcttt 49072764  T
Q  116 caata 120  Q
    |||||    
T  49072765 caata 49072769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 43369682 - 43369778
Alignment:
Q  24 aaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga-cacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||  ||| ||  |||| |||||| ||||||||||||||||    
T  43369682 aaataatatgataaaattaaagtgactagaatactcatgcatccggatctgcaacgttgatgaca-aaaccattgattgaatagccgatctttcaata 43369778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 19404681 - 19404764
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||  |||| ||   ||||||||||| |||||||||||||||||||| | ||| ||||| ||||||    
T  19404681 ctacaaataatatgataaaatctaagtcactgaaatactcatgcttccggatctgcaacattgacgcccaaatcattgattgaa 19404764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 35261460 - 35261405
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||||||||||||    
T  35261460 atatgataaaattaaagtgaccggaatacacatgcctccggatctgcaacattgac 35261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 13592423 - 13592478
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||| | ||||| ||||| |||||||||||||| |||||    
T  13592423 atatgataaaattaaagtgaccagaatacccatgcatccggatctgcaacgttgac 13592478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 13796853 - 13796917
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  13796853 ctacaaataatatgataaaacttaagtcacctaaatactcatgcttccggatctgcaacgttgac 13796917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 23425465 - 23425510
Alignment:
Q  207 aaatcataaagaaaaaacctaggtctatgaaaaactcacttattta 252  Q
    |||||| ||||||||||||||| |||||| |||| |||||||||||    
T  23425465 aaatcacaaagaaaaaacctagatctatgtaaaaatcacttattta 23425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 46244176 - 46244205
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgac 49  Q
    ||||||||||||||||||||||||||||||    
T  46244176 ctacaaataatatgataaaattaaagtgac 46244205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 2843155 - 2843247
Alignment:
Q  29 atatgataaaattaaagtgacaataatactca-tgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||| |||||||||||||   ||||  || |||||||||||||||||||||||| | ||| || || |||||| |  |||||||||||||    
T  2843155 atatgatgaaattaaagtgaccggaatatccattgcctccggatctgcaacattgacgctcaaatctttgattgaacaatcgatctttcaata 2843247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 6559040 - 6558984
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||   |||| |||| ||||||||||||||||| |||||    
T  6559040 atatgataaaattaaagtgaccggaatattcatggcctccggatctgcaacgttgac 6558984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 14627793 - 14627885
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   |||| |||| ||||||| ||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  14627793 atatgataaaattaaagtgactggaatattcatggcctccgaatctgcaacgttgacgctcaaatctttgattgaataatcgatctttcaata 14627885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19297037 - 19296973
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  19297037 ctacaaataatatgataaaacttaagttaccgaaatacccatgcttccggatctgcaacgttgac 19296973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 35667146 - 35667238
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatg-cctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   ||||  |||| |||||| ||||||||||||||| | ||| || || |||||| |  |||||||||||||    
T  35667146 atatgataaaattaaagtgaccggaatatccatggcctccgaatctgcaacattgacgctcaaatcgttgattgaataatcgatctttcaata 35667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 34686 - 34786
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaat 119  Q
    ||||||||||||||||||||||||||||||   || ||||||| |||||||| |||||| ||||| || || ||||| |||| | ||  |||||||||||    
T  34686 ctacaaataatatgataaaattaaagtgactggaaaactcatgtctccggatttgcaacgttgacgcataaatcattgattgcatagtagatctttcaat 34785  T
Q  120 a 120  Q
    |    
T  34786 a 34786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 6199 - 6112
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||||||  || | || | ||||| ||||| |||||||||||||||||||||  ||| ||||| ||||||    
T  6199 atgtctacaaataatatgataaaatctaaatcaccagaatacacatgcttccggatctgcaacattgacatccaaatcattgattgaa 6112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 15571654 - 15571567
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    ||||||| |||||||||||||||||| |||| ||   | ||||||||| |||||||||||||| ||||||| ||| ||||| ||||||    
T  15571654 atgtctataaataatatgataaaatttaagtcactgaactactcatgcttccggatctgcaacgttgacacccaaatcattgattgaa 15571567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 11768164 - 11768075
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||| |||||||||||| | ||| || || |||||| |  |||||||||||||    
T  11768164 atatgataaaattaaagtgaccataata--catgcctccagatttgcaacattgacgctcaaatctttgattgaataatcgatctttcaata 11768075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19100539 - 19100585
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatg 62  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||    
T  19100539 atgtctacaaataatatgataaaattaaagtgactggaatactcatg 19100585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 6217062 - 6216979
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||| |||| ||   ||||| ||||| |||| ||||||||| ||||| | ||| ||||| ||||||    
T  6217062 ctacaaataatatgataaaatttaagtcaccgaaatacacatgcttccgaatctgcaacgttgacgcccaaatcattgattgaa 6216979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 11192542 - 11192443
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||||||| |||||| |||||||||    ||||||||||  ||||||||| |||| ||||||| ||| ||||| |||||| | | | ||||||||||    
T  11192542 tacaaataatacgataaatttaaagtgatcgaaatactcatgtttccggatctacaacgttgacacccaaatcatttattgaataactggtctttcaata 11192443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 13468772 - 13468678
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctt 114  Q
    ||||| |||||||||||||| ||||||||  | |||||| |||  |||| ||||||||| ||||||| | | ||||| |||||| | ||||||||    
T  13468772 ctacacataatatgataaaactaaagtgatcaaaatactgatgtttccgaatctgcaacgttgacactcgaatcattgattgaataaccgatctt 13468678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 3166526 - 3166465
Alignment:
Q  22 acaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga 83  Q
    ||||||||||||||||||||||||||     ||||| ||||| |||| ||||||||||||||    
T  3166526 acaaataatatgataaaattaaagtggttgaaatacacatgcatccgaatctgcaacattga 3166465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 9762374 - 9762423
Alignment:
Q  17 tgtctacaaataatatgataaaattaaagtgacaataatactcatgcctc 66  Q
    |||||||||||||||| ||||||| |||||||||  ||| ||||||||||    
T  9762374 tgtctacaaataatataataaaatcaaagtgacaggaatgctcatgcctc 9762423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 30298194 - 30298149
Alignment:
Q  207 aaatcataaagaaaaaacctaggtctatgaaaaactcacttattta 252  Q
    |||||||||||||||||||||| ||||||  ||| |||||||||||    
T  30298194 aaatcataaagaaaaaacctagatctatgtgaaaatcacttattta 30298149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 6445914 - 6445874
Alignment:
Q  215 aagaaaaaacctaggtctatgaaaaactcacttatttaaat 255  Q
    |||||||||||||| |||||| |||| ||||||||||||||    
T  6445914 aagaaaaaacctagatctatgtaaaaatcacttatttaaat 6445874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 13007393 - 13007329
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  13007393 ctacaaataatatgataaaacttaagtcaccgaaatacccatgcttccggatctgcaacgttgac 13007329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 26578417 - 26578325
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||| |||||||||||||   |||| |||| || |||||||||||||||||||| | ||| || || |||||| |  |||||||||||||    
T  26578417 atatgatgaaattaaagtgaccgaaatattcattgcttccggatctgcaacattgacgcccaaatctttgattgaacaatcgatctttcaata 26578325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 41184354 - 41184446
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatg-cctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   ||||  |||| |||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  41184354 atatgataaaattaaagtgactggaatatccatggcctccggatctgcaacgttgacgcccaaatctttgattgaataatcgatctttcaata 41184446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 42580053 - 42579997
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||   |||| |||| ||||||||||||||||| |||||    
T  42580053 atatgataaaattaaagtgaccggaatattcatggcctccggatctgcaacgttgac 42579997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 29279495 - 29279578
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||| |||| ||   || |||||||  |||||||||||||||||||| ||||| ||||| ||||||    
T  29279495 ctacaaataatatgataaaatttaagtcaccgaaaaactcatgtttccggatctgcaacattgacgcacaaatcattgattgaa 29279578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 44881656 - 44881705
Alignment:
Q  28 aatatgataaaattaaagtgacaataatactcatgcctccggatctgcaa 77  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  44881656 aatatgataaaattaaagtgaccgaaatactcatgtctccggatctgcaa 44881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7646653 - 7646589
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  7646653 ctacaaataatatgataaaacttaagtcaccgaaatactcatgcttccggatctgcaacgttgac 7646589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 31128705 - 31128769
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||  |||| ||   ||||||||||| |||||||||||||| |||||    
T  31128705 ctacaaataatatgataaaatataagtcactgaaatactcatgcttccggatctgcaacgttgac 31128769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 7448421 - 7448358
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  7448421 tacaaataatatgataaaacttaagtcactgaaatactcatgcttccggatctgcaacgttgac 7448358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 26025331 - 26025414
Alignment:
Q  36 aaaattaaagtgacaataatactcat-gcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaa 118  Q
    ||||||||||||||   |||| |||| ||||||||||||||||||||||||| ||| |  || |||||| | ||||||||||||    
T  26025331 aaaattaaagtgactggaatattcatcgcctccggatctgcaacattgacacccaaatttttgattgaataaccgatctttcaa 26025414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 37614040 - 37614098
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacaca 87  Q
    ||||||||||||||||||||    |||||||||| |||| |||||||||| ||||||||    
T  37614040 atatgataaaattaaagtgattggaatactcatgtctcccgatctgcaacgttgacaca 37614098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 39641773 - 39641827
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga 83  Q
    |||||||||||| ||||||||   ||||||| |||||||||||||||||| ||||    
T  39641773 atatgataaaataaaagtgactgaaatactcgtgcctccggatctgcaacgttga 39641827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 4778928 - 4778864
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  4778928 ctacaaataatatgataaaacttaagtcaccgaaatacccatgcttccggatctgcaacgttgac 4778864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 9986256 - 9986348
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   ||||| ||| ||||||| ||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  9986256 atatgataaaattaaagtgaccggaatacccatggcctccgaatctgcaacgttgacgcccaaatctttaattgaataatcgatctttcaata 9986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 21570322 - 21570378
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatg-cctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||    |||| ||||| ||||||||||||||||||||||    
T  21570322 atatgataaaattaaagtgaacggaatattcatggcctccggatctgcaacattgac 21570378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 32913229 - 32913181
Alignment:
Q  207 aaatcataaagaaaaaacctaggtctatgaaaaactcacttatttaaat 255  Q
    |||||| ||||||||||||||| ||||||  ||| ||||||||||||||    
T  32913229 aaatcacaaagaaaaaacctagatctatgtgaaaatcacttatttaaat 32913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 32913407 - 32913351
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||  |||||  ||| ||||||||||||||||| |||||    
T  32913407 atatgataaaattaaagtgaccgtaatatccatggcctccggatctgcaacgttgac 32913351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 36943046 - 36943110
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||| |||| ||   ||||| ||||  |||||||||||||| |||||    
T  36943046 ctacaaataatatgataaaattcaagtcaccgaaatacccatgtttccggatctgcaacgttgac 36943110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 37876531 - 37876607
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcatt 96  Q
    |||||||||||||||||||||| |||| ||   ||||| ||||| | |||||||||||| ||||  | |||||||||    
T  37876531 ctacaaataatatgataaaatttaagtcaccgaaatacccatgctttcggatctgcaacgttgatgcccaagtcatt 37876607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 39987555 - 39987464
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   ||||| |||||||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  39987555 atatgataaaattaaagtgaccggaatacccatgcctccggatctgcaacgttgacgcccaattctttgattgaataatcgatctttcaata 39987464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 41081618 - 41081672
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga 83  Q
    |||||||||||||||| |||| | ||||| |||||||||||||||||||||||||    
T  41081618 atatgataaaattaaaatgaccagaatacacatgcctccggatctgcaacattga 41081672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 18569225 - 18569316
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||||||||   ||||| |||||||| ||||||||||| ||||||| ||| || |  |||||| |  |||||||||||||    
T  18569225 atatgataaaattaaagtgaccggaatacccatgcctctggatctgcaacgttgacacccaaatcttcaattgaataatcgatctttcaata 18569316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 32873781 - 32873852
Alignment:
Q  13 aatatgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||||||||| |||||||    ||||| ||||  || |||||||||||||||||    
T  32873781 aatatgtctacaaataatatgataaaatcaaagtgatcgaaatacccatgtttctggatctgcaacattgac 32873852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 44915807 - 44915724
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||  |||  ||   ||||||||||| |||||||||||||||||||| | ||| ||||| ||||||    
T  44915807 ctacaaataatatgataaaatctaagaaaccgaaatactcatgcttccggatctgcaacattgacgcccaaatcattgattgaa 44915724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 19052239 - 19052299
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacatt 81  Q
    |||||||||||||||||||||||||| || | |||| ||||| || ||||||| |||||||    
T  19052239 tacaaataatatgataaaattaaagtaacgagaataatcatgtcttcggatctacaacatt 19052299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 50616598 - 50616652
Alignment:
Q  19 tctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatct 73  Q
    ||||||||||||||||||||||| || | |||| ||||||||||| |||| ||||    
T  50616598 tctacaaataatatgataaaatttaaatcacaaaaatactcatgcttccgtatct 50616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 50624425 - 50624479
Alignment:
Q  19 tctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatct 73  Q
    ||||||||||||||||||||||| || | |||| ||||||||||| |||| ||||    
T  50624425 tctacaaataatatgataaaatttaaatcacaaaaatactcatgcttccgtatct 50624479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 48809146 - 48809187
Alignment:
Q  24 aaataatatgataaaattaaagtgacaataatactcatgcct 65  Q
    ||||||||||||||||||||||||||   |||||||||||||    
T  48809146 aaataatatgataaaattaaagtgactgaaatactcatgcct 48809187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 14872807 - 14872743
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||   |||| || | ||||| ||||| |||||||||||||| |||||    
T  14872807 ctacaaataatatgataaaacctaagtcaccaaaatacccatgcttccggatctgcaacgttgac 14872743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 21947542 - 21947606
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   |||| |||||| |||||||||||||| |||||    
T  21947542 ctacaaataatatgataaaacttaagtcaccgaaatattcatgcttccggatctgcaacgttgac 21947606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 39927469 - 39927525
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgaca 85  Q
    ||||||||||||||||||||    |||||||||| || |||||||||||| ||||||    
T  39927469 atatgataaaattaaagtgattggaatactcatgtcttcggatctgcaacgttgaca 39927525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 41911974 - 41911890
Alignment:
Q  19 tctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||| ||| |||   |||||||||| | | | ||| || ||| |||||||||| |||||| ||||||    
T  41911974 tctacaaataatatgataaaataaaaatgattgtaatactcatacattcagatttgtaacgttgacacacacgtcattgattgaa 41911890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 21808 - 21878
Alignment:
Q  25 aataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcat 95  Q
    ||||||||||||| |||||| |||||  |||||||||||||||||||||||||  ||||||| ||| ||||    
T  21808 aataatatgataacattaaattgacatgaatactcatgcctccggatctgcaatgttgacacccaaatcat 21878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 31852113 - 31852181
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||| |||||||||||||||||| || | || | ||||||||||| |||||||||||||| |||||    
T  31852113 atgtctataaataatatgataaaatttaaatcaccagaatactcatgcttccggatctgcaactttgac 31852181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1704052 - 1704119
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattga 83  Q
    ||||||| ||||||||||||| ||||||||||||   |||| |||||| ||||||||| |||| ||||    
T  1704052 atgtctataaataatatgatacaattaaagtgactggaatattcatgcatccggatctacaacgttga 1704119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 33543561 - 33543628
Alignment:
Q  53 aatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||| ||||| |||||||||||||||||||||| ||| |  || |||||| || |||||||||||||    
T  33543561 aatacccatgcttccggatctgcaacattgacacccaaatttttgattgaatagtcgatctttcaata 33543628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 9380188 - 9380106
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    ||||||||||||||||||||  || | || | ||||| ||||| || | |||| |||||||||||||||| ||||| ||||||    
T  9380188 tacaaataatatgataaaatctaaatcaccaaaatacccatgcttctgaatctacaacattgacacacaaatcattgattgaa 9380106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 31296986 - 31296922
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||| |||||||||||||  || | || | ||||||||||| |||||||||||||| |||||    
T  31296986 ctacaaacaatatgataaaatataaatcaccagaatactcatgcttccggatctgcaacgttgac 31296922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 33053092 - 33053156
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  33053092 ctacaaataatatgataaaacttaagtcactgaaatacccatgcttccggatctgcaacgttgac 33053156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 34018726 - 34018662
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||   |||| ||   ||||||||||| |||||||||||||| |||||    
T  34018726 ctacaaataatatgataaaacataagtcactgaaatactcatgcttccggatctgcaacgttgac 34018662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 27110383 - 27110470
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||||||||  |||| || | ||||| ||||| ||| |||||||||| ||||| | ||| ||||| ||||||    
T  27110383 atgtctacaaataatatgataaaatctaagtcactaaaatacacatgcttccagatctgcaacgttgacgctcaaatcattgattgaa 27110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 33299024 - 33298969
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||| | ||||||||||| |||| ||||||||| |||||    
T  33299024 atatgataaaattaaagtgactagaatactcatgcatccgtatctgcaacgttgac 33298969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 33342614 - 33342555
Alignment:
Q  20 ctacaaata-atatgataaaattaaagtgacaataatactcatgcctccggatctgcaac 78  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||||| ||||||||||    
T  33342614 ctacaaatatatatgataaaattaaagtgacctgaatactcatgcctccagatctgcaac 33342555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 36533079 - 36533018
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaa 77  Q
    |||||||| ||||||||||||||||||||||||||  ||| | |||||| || |||||||||    
T  36533079 atgtctacgaataatatgataaaattaaagtgacatgaatgcccatgccaccagatctgcaa 36533018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 12169334 - 12169431
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaa 118  Q
    ||||||||||||||||||||||||| ||  | ||||  |||||||||  ||||||||||| |||    || ||||  |||||| ||||||||||||||    
T  12169334 tacaaataatatgataaaattaaagcgatcagaatatccatgcctccaaatctgcaacatcgacgactaaatcatggattgaatagccgatctttcaa 12169431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 12413762 - 12413859
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaa 118  Q
    ||||||||||||||||||||||||| ||  | ||||  |||||||||  ||||||||||| |||    || ||||  |||||| ||||||||||||||    
T  12413762 tacaaataatatgataaaattaaagcgatcagaatatccatgcctccaaatctgcaacatcgacgactaaatcatggattgaatagccgatctttcaa 12413859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 35812840 - 35812739
Alignment:
Q  19 tctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaa 118  Q
    |||||||||||||||||||||||||||| ||   |||||||||| ||  | |||| |||| || ||   ||| ||||| |||||| | ||||||||||||    
T  35812840 tctacaaataatatgataaaattaaagtcactgaaatactcatgtctttgtatcttcaacgttaacgtccaaatcattaattgaataaccgatctttcaa 35812741  T
Q  119 ta 120  Q
    ||    
T  35812740 ta 35812739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 39153057 - 39153106
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaac 78  Q
    ||||||||||||||||||||    ||||| ||||||||||||||||||||    
T  39153057 atatgataaaattaaagtgatcggaatacccatgcctccggatctgcaac 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 43192261 - 43192318
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacac 86  Q
    ||||||||||||||||||||    |||| ||||| ||||||||||||||| |||||||    
T  43192261 atatgataaaattaaagtgatcggaatattcatgtctccggatctgcaacgttgacac 43192318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 3673608 - 3673544
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||| ||| | |||| ||   ||||||||||| |||||||||||||| |||||    
T  3673608 ctacaaataatatgattaaacttaagtcactgaaatactcatgcttccggatctgcaacgttgac 3673544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 7198120 - 7198200
Alignment:
Q  23 caaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    ||||||||||||||||||  || | || | |||| |||||| |||||||||||||| ||||||  ||| ||||| ||||||    
T  7198120 caaataatatgataaaatctaaatcaccaaaatattcatgcttccggatctgcaacgttgacatccaaatcattgattgaa 7198200  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 12184456 - 12184356
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaat 119  Q
    ||||||||||||||||||||||||| || | | |||||  ||||||||| ||| |||||  |||| | ||| ||||| || ||| || |||| |||||||    
T  12184456 ctacaaataatatgataaaattaaaatgtccagaatacatatgcctccgaatcagcaacggtgacgcccaaatcattgatggaatagtcgatttttcaat 12184357  T
Q  120 a 120  Q
    |    
T  12184356 a 12184356  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 12428884 - 12428784
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaat 119  Q
    ||||||||||||||||||||||||| || | | |||||  ||||||||| ||| |||||  |||| | ||| ||||| || ||| || |||| |||||||    
T  12428884 ctacaaataatatgataaaattaaaatgtccagaatacatatgcctccgaatcagcaacggtgacgcccaaatcattgatggaatagtcgatttttcaat 12428785  T
Q  120 a 120  Q
    |    
T  12428784 a 12428784  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 14544825 - 14544889
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||| |||| ||   ||| | ||||| |||||||||||||| |||||    
T  14544825 ctacaaataatatgataaaatttaagtcaccgaaattcccatgcttccggatctgcaacgttgac 14544889  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 20553163 - 20553227
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||   |||| ||   ||||||||||| |||||||||||||| |||||    
T  20553163 ctacaaataatatgataaaacctaagtcaccgaaatactcatgcttccggatctgcaacgttgac 20553227  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23230810 - 23230734
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcatt 96  Q
    ||||||||||||||||||||   |||| ||   ||||| ||||| |||||||||||||| ||||| | |||||||||    
T  23230810 ctacaaataatatgataaaacctaagtcaccgaaatacccatgcttccggatctgcaacgttgacgcccaagtcatt 23230734  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 40317457 - 40317524
Alignment:
Q  17 tgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    ||||||||||||||||||||||||||||||||    |||| ||||| ||||  |||||||||||||||    
T  40317457 tgtctacaaataatatgataaaattaaagtgatttaaatattcatgactccaaatctgcaacattgac 40317524  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 30293411 - 30293493
Alignment:
Q  21 tacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||| |||| |||||   ||||||||||| |||| || |||||||||||| | ||| ||||| ||||||    
T  30293411 tacaaataatatgataaagttaatgtgaccgaaatactcatgcatccgaatttgcaacattgactctcaaatcattgattgaa 30293493  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 31794230 - 31794139
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    |||||||||||||||| ||||   |||||||||||||||| ||||||||| ||||  | ||| || || |||||| |  |||||||||||||    
T  31794230 atatgataaaattaaactgaccggaatactcatgcctccgaatctgcaacgttgatgcccaaatctttgattgaataatcgatctttcaata 31794139  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 36734607 - 36734662
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||| ||   ||||||||||||||| |||||||||| |||||    
T  36734607 atatgataaaattaaagtaaccgaaatactcatgcctccagatctgcaacgttgac 36734662  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 46178728 - 46178673
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||| ||||||||   ||||| |||||||||||||||||||| |||||    
T  46178728 atatgataaaataaaagtgaccggaatacccatgcctccggatctgcaacgttgac 46178673  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 24396607 - 24396657
Alignment:
Q  207 aaatcataaagaaaaaacctaggtctatgaaaaactcacttatttaaatat 257  Q
    |||||||||||||||||  ||| |||||| |||| ||||||||||||||||    
T  24396607 aaatcataaagaaaaaaattagatctatgtaaaaatcacttatttaaatat 24396657  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 20464896 - 20464977
Alignment:
Q  22 acaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgacacacaagtcattcattgaa 103  Q
    |||||||||||||||||||| |||| ||   ||||||||||| | |  ||||||||||||||| | ||| ||||| ||||||    
T  20464896 acaaataatatgataaaatttaagtcaccgaaatactcatgctttcaaatctgcaacattgacgcccaaatcatttattgaa 20464977  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7448834 - 7448902
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| ||| | |||| ||   ||||||||||| ||||||| |||||| |||||    
T  7448834 atgtctacaaataatatgatgaaacttaagtcaccgaaatactcatgcttccggatatgcaacgttgac 7448902  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7456976 - 7457044
Alignment:
Q  16 atgtctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| ||| | |||| ||   ||||||||||| ||||||| |||||| |||||    
T  7456976 atgtctacaaataatatgatgaaacttaagtcaccgaaatactcatgcttccggatatgcaacgttgac 7457044  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 12116258 - 12116166
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcat-gcctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||| ||||||||||||| | ||||  ||| ||||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  12116258 atatgatgaaattaaagtgactagaatatccattgcctccggatctgcaacgttgacgctcaaatctttgattgaacaatcgatctttcaata 12116166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 21431777 - 21431713
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  21431777 ctacaaataatatgataaaacttaagtcaccgaaatacccatgcttccggatctgcaacgttgac 21431713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 52923041 - 52923105
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||| | |||| ||   ||||| ||||| |||||||||||||| |||||    
T  52923041 ctacaaataatatgataaaacttaagtcaccgaaatacccatgcttccggatctgcaacgttgac 52923105  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 4687 - 4720
Alignment:
Q  34 ataaaattaaagtgacaataatactcatgcctcc 67  Q
    ||||||||||| ||||||||||||||||||||||    
T  4687 ataaaattaaaatgacaataatactcatgcctcc 4720  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 8854 - 8762
Alignment:
Q  29 atatgataaaattaaagtgacaataatactcatgc-ctccggatctgcaacattgacacacaagtcattcattgaagagccgatctttcaata 120  Q
    ||||||||||||||||||||| | ||||  ||||  ||||||||||||||| ||||| | ||| || || |||||| |  |||||||||||||    
T  8854 atatgataaaattaaagtgaccagaatatccatggtctccggatctgcaacgttgacgcccaaatctttgattgaataatcgatctttcaata 8762  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 32671 - 32735
Alignment:
Q  20 ctacaaataatatgataaaattaaagtgacaataatactcatgcctccggatctgcaacattgac 84  Q
    |||||||||||||||||||||  |||| ||   ||||||||||| ||| |||||||||| |||||    
T  32671 ctacaaataatatgataaaatctaagtcaccgaaatactcatgcttccagatctgcaacgttgac 32735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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