View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18104_low_8 (Length: 377)
Name: NF18104_low_8
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18104_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 43796512 - 43796171
Alignment:
| Q |
19 |
tcttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggcttcttac |
118 |
Q |
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| T |
43796512 |
tcttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggctttttac |
43796413 |
T |
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| Q |
119 |
cttttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaaacattgcac |
218 |
Q |
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| T |
43796412 |
cttttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccgttgctaaaagtttttccacagatattacat |
43796313 |
T |
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| Q |
219 |
tgatgagtagattcttgaacagaagcctcatccttagcatcatcttcatcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcat |
318 |
Q |
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| T |
43796312 |
tcgtg------ttctgggatagaaacctcatccttagcatcatcttcatcacttgatagagaactaaaagacctctttatcctcttttccgactcttcac |
43796219 |
T |
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| Q |
319 |
gggtattctcatgatcatgcttatgatctttatcaaaactagccctat |
366 |
Q |
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| T |
43796218 |
aggtgttctcaaaaccatgcttactatctttatcaaaactagccctat |
43796171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 68 - 352
Target Start/End: Complemental strand, 43796187 - 43795900
Alignment:
| Q |
68 |
atcaaaactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccgg |
167 |
Q |
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| T |
43796187 |
atcaaaactagccctattataactaccttgtattgagagaggggtttttaccttttgtgaacgatgattaagtttctttttaagaaagtgagatctgcgg |
43796088 |
T |
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| Q |
168 |
tggccacccaatgcttttccattgctaaaagtttttccacaaacattgcactgatgagtagattcttgaacagaagcctcatccttag---catcatctt |
264 |
Q |
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| T |
43796087 |
tgaccgcccaacgcttttccattgctaaaagtttttccacaaacattgcattgatgtgtagattcctgaatagaaacctcatccttagtatcatcttctt |
43795988 |
T |
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| Q |
265 |
catcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcatgggtattctcatgatcatgcttatgatctttatc |
352 |
Q |
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| T |
43795987 |
catcacttgatagtgaagaagaagaccttttcatcctcttttctgaatcttcgtagggtttctcgtaaccatgcttatgatctttatc |
43795900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 28847477 - 28847559
Alignment:
| Q |
127 |
gatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaa |
209 |
Q |
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| T |
28847477 |
gatgatgattacgcttcatcttgagaaagtgagatcttcggtgaccacctaatgtttttccattgctgaaagtcttaccacaa |
28847559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 29131089 - 29130956
Alignment:
| Q |
73 |
aactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggcc |
172 |
Q |
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|||| ||| |||||||||| ||||||||| |||||| || |||||||| | || ||||| ||||| | |||||||||||||||||| ||||| || |
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| T |
29131089 |
aacttgccatattattattttattgtattgagaaaggggtttccaccttttgggaataatgatgaagtttatgcttaagaaagtgagatcttcggtgacc |
29130990 |
T |
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| Q |
173 |
acccaatgcttttccattgctaaaagtttttcca |
206 |
Q |
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| T |
29130989 |
attcaatgcttttccgttgttaaatttttttcca |
29130956 |
T |
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