View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18104_low_9 (Length: 362)

Name: NF18104_low_9
Description: NF18104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18104_low_9
NF18104_low_9
[»] chr6 (24 HSPs)
chr6 (18-197)||(9953036-9953215)
chr6 (18-197)||(5739010-5739190)
chr6 (18-193)||(23388973-23389149)
chr6 (18-193)||(23379634-23379810)
chr6 (19-149)||(34501462-34501592)
chr6 (18-196)||(2371414-2371592)
chr6 (88-163)||(13004434-13004509)
chr6 (116-197)||(28666095-28666176)
chr6 (106-197)||(10289186-10289277)
chr6 (88-197)||(31071494-31071603)
chr6 (127-182)||(20181288-20181343)
chr6 (127-182)||(22154648-22154703)
chr6 (90-151)||(6512442-6512503)
chr6 (88-151)||(28112641-28112704)
chr6 (160-197)||(12981151-12981188)
chr6 (99-147)||(12991556-12991604)
chr6 (158-197)||(9314765-9314804)
chr6 (158-197)||(21633551-21633590)
chr6 (158-197)||(22463515-22463554)
chr6 (158-197)||(28116940-28116979)
chr6 (158-195)||(9840320-9840357)
chr6 (157-197)||(2378435-2378475)
chr6 (48-80)||(13004611-13004643)
chr6 (157-197)||(15543215-15543255)
[»] chr3 (38 HSPs)
chr3 (18-197)||(35411676-35411856)
chr3 (18-197)||(538015-538194)
chr3 (18-197)||(23299374-23299553)
chr3 (18-197)||(16185477-16185656)
chr3 (18-197)||(6921890-6922069)
chr3 (18-197)||(52198305-52198484)
chr3 (18-197)||(10884018-10884197)
chr3 (18-197)||(18645562-18645741)
chr3 (106-197)||(53814971-53815062)
chr3 (72-197)||(10107489-10107614)
chr3 (43-197)||(29344618-29344773)
chr3 (87-197)||(3839790-3839903)
chr3 (106-197)||(16243166-16243257)
chr3 (106-196)||(9380012-9380102)
chr3 (107-197)||(54460367-54460457)
chr3 (107-197)||(34984668-34984758)
chr3 (88-197)||(19302255-19302364)
chr3 (110-197)||(10880776-10880863)
chr3 (106-197)||(41976321-41976412)
chr3 (106-189)||(54736759-54736842)
chr3 (116-197)||(20729395-20729477)
chr3 (105-194)||(43808881-43808970)
chr3 (99-175)||(31548573-31548649)
chr3 (18-175)||(22994413-22994570)
chr3 (93-197)||(17532565-17532669)
chr3 (95-176)||(19305445-19305526)
chr3 (69-113)||(55032789-55032833)
chr3 (34-85)||(9380143-9380194)
chr3 (18-64)||(6445482-6445528)
chr3 (161-197)||(31857055-31857091)
chr3 (157-197)||(50462415-50462455)
chr3 (158-197)||(9157508-9157547)
chr3 (159-197)||(2280741-2280779)
chr3 (18-64)||(28265134-28265180)
chr3 (159-197)||(42355298-42355336)
chr3 (18-64)||(53815105-53815151)
chr3 (18-60)||(55032758-55032800)
chr3 (157-197)||(43926124-43926164)
[»] chr4 (49 HSPs)
chr4 (18-197)||(15431164-15431343)
chr4 (18-197)||(15437778-15437957)
chr4 (18-197)||(18910604-18910783)
chr4 (18-197)||(3798617-3798796)
chr4 (18-197)||(5721792-5721971)
chr4 (18-197)||(19865464-19865643)
chr4 (18-197)||(33410783-33410962)
chr4 (18-197)||(5680469-5680648)
chr4 (18-197)||(5669628-5669807)
chr4 (18-197)||(9716951-9717130)
chr4 (18-196)||(19861108-19861286)
chr4 (18-147)||(40617633-40617762)
chr4 (18-197)||(12237354-12237533)
chr4 (18-197)||(49269735-49269914)
chr4 (79-197)||(14571026-14571144)
chr4 (18-151)||(53093767-53093900)
chr4 (69-197)||(37104113-37104241)
chr4 (262-357)||(18449136-18449231)
chr4 (106-189)||(21418987-21419070)
chr4 (106-197)||(3718336-3718427)
chr4 (106-197)||(12782106-12782197)
chr4 (106-189)||(40794200-40794283)
chr4 (88-197)||(29323979-29324088)
chr4 (88-197)||(44809795-44809904)
chr4 (109-197)||(44164001-44164090)
chr4 (116-197)||(52007350-52007431)
chr4 (106-197)||(15430674-15430766)
chr4 (106-197)||(15437288-15437380)
chr4 (106-197)||(27013229-27013321)
chr4 (116-197)||(53010377-53010458)
chr4 (106-197)||(27677874-27677966)
chr4 (106-197)||(24044966-24045057)
chr4 (91-192)||(34320738-34320839)
chr4 (89-197)||(56198029-56198137)
chr4 (106-197)||(19826701-19826793)
chr4 (106-197)||(27691933-27692025)
chr4 (116-197)||(19819950-19820032)
chr4 (88-197)||(56194722-56194831)
chr4 (116-197)||(35509201-35509280)
chr4 (88-197)||(47114776-47114885)
chr4 (92-197)||(15405793-15405898)
chr4 (88-197)||(33926121-33926230)
chr4 (88-151)||(15812973-15813036)
chr4 (18-60)||(37104082-37104124)
chr4 (106-147)||(37741471-37741512)
chr4 (157-197)||(38284375-38284415)
chr4 (169-197)||(17669447-17669475)
chr4 (157-197)||(34018659-34018699)
chr4 (157-197)||(48416408-48416448)
[»] chr8 (26 HSPs)
chr8 (18-197)||(45156739-45156918)
chr8 (18-197)||(5540816-5540995)
chr8 (18-197)||(14420864-14421043)
chr8 (18-197)||(33878059-33878238)
chr8 (18-197)||(43682618-43682798)
chr8 (18-193)||(25595505-25595681)
chr8 (18-197)||(10663011-10663190)
chr8 (23-197)||(18722136-18722310)
chr8 (18-162)||(25228049-25228191)
chr8 (18-193)||(25592320-25592496)
chr8 (88-197)||(18826725-18826834)
chr8 (43-197)||(12582218-12582372)
chr8 (262-357)||(15662654-15662749)
chr8 (88-197)||(22174782-22174891)
chr8 (106-197)||(30640505-30640598)
chr8 (88-197)||(14589707-14589816)
chr8 (106-197)||(19792926-19793019)
chr8 (121-197)||(23612569-23612645)
chr8 (127-197)||(5981150-5981220)
chr8 (18-70)||(20520079-20520131)
chr8 (18-64)||(17895338-17895384)
chr8 (87-151)||(38249248-38249312)
chr8 (158-197)||(20261647-20261686)
chr8 (158-197)||(21048277-21048316)
chr8 (24-82)||(30640624-30640682)
chr8 (157-197)||(16952998-16953038)
[»] chr7 (23 HSPs)
chr7 (18-197)||(8276012-8276191)
chr7 (18-197)||(26556510-26556689)
chr7 (18-197)||(10431386-10431565)
chr7 (18-197)||(4542074-4542252)
chr7 (18-197)||(2442099-2442277)
chr7 (106-197)||(45288047-45288138)
chr7 (106-197)||(45291383-45291474)
chr7 (87-197)||(20081530-20081640)
chr7 (99-197)||(17729973-17730071)
chr7 (106-197)||(9865551-9865642)
chr7 (106-197)||(9080376-9080467)
chr7 (106-197)||(10344616-10344707)
chr7 (106-197)||(4596833-4596924)
chr7 (106-197)||(4694723-4694814)
chr7 (44-166)||(9273882-9274003)
chr7 (88-197)||(16164889-16164998)
chr7 (88-197)||(48644616-48644725)
chr7 (88-197)||(6602621-6602730)
chr7 (128-197)||(48645852-48645921)
chr7 (157-197)||(37167030-37167070)
chr7 (159-197)||(11826392-11826430)
chr7 (116-146)||(18563366-18563396)
chr7 (168-197)||(13450736-13450765)
[»] chr5 (29 HSPs)
chr5 (18-197)||(37214766-37214945)
chr5 (26-197)||(43490793-43490964)
chr5 (18-197)||(22937876-22938055)
chr5 (18-197)||(32837083-32837262)
chr5 (18-197)||(42061486-42061665)
chr5 (18-197)||(28442002-28442181)
chr5 (16-197)||(31862872-31863053)
chr5 (69-197)||(14376706-14376834)
chr5 (105-197)||(28788309-28788401)
chr5 (88-197)||(14016927-14017036)
chr5 (106-197)||(21336650-21336742)
chr5 (106-197)||(21827949-21828041)
chr5 (88-197)||(17747617-17747726)
chr5 (106-195)||(39191333-39191422)
chr5 (106-197)||(40916795-40916889)
chr5 (106-197)||(18031710-18031801)
chr5 (43-192)||(4100278-4100431)
chr5 (133-197)||(7270241-7270305)
chr5 (116-175)||(2836702-2836761)
chr5 (116-197)||(30065562-30065643)
chr5 (18-85)||(21336542-21336609)
chr5 (106-163)||(2837584-2837641)
chr5 (18-85)||(21827841-21827908)
chr5 (14-60)||(14376671-14376717)
chr5 (148-197)||(25329456-25329505)
chr5 (88-151)||(7624303-7624366)
chr5 (18-82)||(39191446-39191510)
chr5 (157-197)||(41307405-41307445)
chr5 (106-146)||(33551385-33551425)
[»] chr2 (36 HSPs)
chr2 (18-197)||(25869835-25870014)
chr2 (18-197)||(25873203-25873382)
chr2 (18-197)||(38006107-38006286)
chr2 (18-197)||(26358672-26358851)
chr2 (18-197)||(36809256-36809435)
chr2 (19-197)||(25139862-25140040)
chr2 (18-197)||(25821738-25821922)
chr2 (18-197)||(16788389-16788567)
chr2 (18-197)||(30275513-30275691)
chr2 (69-197)||(15466170-15466298)
chr2 (106-197)||(10599951-10600042)
chr2 (88-197)||(38014636-38014745)
chr2 (106-197)||(3874482-3874573)
chr2 (88-197)||(31430529-31430638)
chr2 (122-197)||(5665830-5665905)
chr2 (116-197)||(43722904-43722985)
chr2 (109-197)||(13972725-13972813)
chr2 (116-197)||(5104953-5105032)
chr2 (106-195)||(13136764-13136853)
chr2 (69-197)||(29439597-29439723)
chr2 (88-194)||(36985626-36985732)
chr2 (116-197)||(6825974-6826055)
chr2 (88-197)||(45453051-45453160)
chr2 (88-162)||(31428340-31428414)
chr2 (88-197)||(45456300-45456409)
chr2 (18-69)||(10600091-10600142)
chr2 (157-197)||(9189532-9189572)
chr2 (157-197)||(37280556-37280596)
chr2 (157-197)||(43208769-43208809)
chr2 (18-60)||(29439712-29439754)
chr2 (159-197)||(31586785-31586823)
chr2 (169-197)||(1504290-1504318)
chr2 (169-197)||(1507492-1507520)
chr2 (157-197)||(8887842-8887882)
chr2 (157-197)||(25957323-25957363)
chr2 (157-197)||(40780658-40780698)
[»] chr1 (22 HSPs)
chr1 (18-197)||(29644129-29644308)
chr1 (18-197)||(2793299-2793478)
chr1 (21-197)||(1951169-1951345)
chr1 (18-197)||(49499389-49499568)
chr1 (18-151)||(34733084-34733217)
chr1 (99-197)||(41059135-41059234)
chr1 (110-197)||(2404722-2404809)
chr1 (88-197)||(45961598-45961707)
chr1 (88-196)||(27537104-27537212)
chr1 (116-197)||(21019287-21019367)
chr1 (18-197)||(42021721-42021902)
chr1 (106-197)||(21108302-21108393)
chr1 (88-197)||(31204014-31204123)
chr1 (88-151)||(6071791-6071854)
chr1 (158-197)||(47708778-47708817)
chr1 (160-197)||(22460406-22460443)
chr1 (157-197)||(45940621-45940661)
chr1 (158-197)||(3088696-3088735)
chr1 (168-197)||(22454290-22454319)
chr1 (160-197)||(49147113-49147150)
chr1 (157-197)||(28110283-28110323)
chr1 (157-197)||(37184743-37184783)
[»] scaffold0035 (1 HSPs)
scaffold0035 (18-197)||(61597-61776)
[»] scaffold0015 (1 HSPs)
scaffold0015 (18-197)||(197242-197410)
[»] scaffold0005 (2 HSPs)
scaffold0005 (18-186)||(290974-291142)
scaffold0005 (79-197)||(246232-246350)
[»] scaffold0080 (1 HSPs)
scaffold0080 (18-174)||(26277-26424)
[»] scaffold0757 (1 HSPs)
scaffold0757 (106-197)||(4563-4654)
[»] scaffold0270 (3 HSPs)
scaffold0270 (106-197)||(969-1060)
scaffold0270 (106-197)||(4329-4420)
scaffold0270 (106-197)||(11459-11550)
[»] scaffold0334 (1 HSPs)
scaffold0334 (73-197)||(18463-18588)
[»] scaffold0381 (1 HSPs)
scaffold0381 (106-197)||(6462-6554)
[»] scaffold0520 (1 HSPs)
scaffold0520 (107-197)||(4790-4880)
[»] scaffold0045 (1 HSPs)
scaffold0045 (91-197)||(88965-89071)
[»] scaffold1993 (1 HSPs)
scaffold1993 (106-197)||(1045-1136)
[»] scaffold1684 (1 HSPs)
scaffold1684 (92-197)||(369-474)
[»] scaffold0567 (1 HSPs)
scaffold0567 (158-197)||(7016-7055)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 9953215 - 9953036
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9953215 caatgtcgaatgaacctcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttggtt 9953116  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtg-aatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||    
T  9953115 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat-gtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5739010 - 5739190
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5739010 caatgtcgaatgaacctcatcctttgctccaaatcgtgacatgtttttaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctt 5739109  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat--aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||  ||||||||||||||| || |||||||  ||||| || ||||||||||||||||||||||||||||||    
T  5739110 tctttgctgtttagacttgcttgtgaactc-aacatatcatgaaaaaaaactctaaaaatagtgaatgactgactgtcatca 5739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 23388973 - 23389149
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggt 116  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |    
T  23388973 caatgtcgagtgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgtt 23389072  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtc 193  Q
    ||  |||||| |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  23389073 ttctttgctgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 23379634 - 23379810
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggt 116  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |    
T  23379634 caatgtcgagtgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgtt 23379733  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtc 193  Q
    ||  ||| || |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  23379734 ttctttgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 34501592 - 34501462
Alignment:
Q  19 aatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttt 118  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||| |||    
T  34501592 aatgtcgaatgaacctcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcatcaaaatcttctttttttcttgtttt 34501493  T
Q  119 tcttgctgcttaagcttgcttgtgaactcaa 149  Q
      |||||| |||| |||||||||||||||||    
T  34501492 ctttgctgtttaaacttgcttgtgaactcaa 34501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 2371592 - 2371414
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| || |||||||||| |||||  || || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  2371592 caatgtcgaatgaacctcgtcctgtgctctaaatctcgatacattttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgttt 2371493  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatc 196  Q
    |  |||||| |||| ||||||| ||||||| |||||||||| ||||| ||| |||||||||||||| ||| ||| |||||    
T  2371492 tatttgctgtttaaacttgcttatgaactc-aaaatatcataaaaaaaacattaaaaatagtgaataactaactatcatc 2371414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 13004509 - 13004434
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13004509 tttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa 13004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 28666095 - 28666176
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  28666095 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 10289277 - 10289186
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  10289277 tttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 31071603 - 31071494
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || ||||||||||| |||||||| |||| ||||| |||| |||||||||||||  ||||||||    
T  31071603 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgctcgtgaactc-aaaacatcatgaaaatgacactaaaaataaagaatgact 31071505  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  31071504 gactgtcatca 31071494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 20181343 - 20181288
Alignment:
Q  127 cttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaat 182  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||    
T  20181343 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaatagcgaat 20181288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 22154648 - 22154703
Alignment:
Q  127 cttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaat 182  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||    
T  22154648 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaatagcgaat 22154703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 6512503 - 6512442
Alignment:
Q  90 tcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    |||||||||||||| | ||||| || ||| ||||||| ||||||||||||||||||||||||    
T  6512503 tcttcaaaatcttcaacttttcatgttttccttgctgtttaagcttgcttgtgaactcaaaa 6512442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 28112641 - 28112704
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    |||||||||||||||| | ||||| || ||| ||||||  ||||||||||||||||||||||||    
T  28112641 tttcttcaaaatcttcaacttttcatgctttccttgctttttaagcttgcttgtgaactcaaaa 28112704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 12981151 - 12981188
Alignment:
Q  160 aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12981151 aaaagactctaaaaatagtgaatgactgactgtcatca 12981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 12991556 - 12991604
Alignment:
Q  99 tcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactc 147  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||    
T  12991556 tcttcaatttttcttgcttttcttgttgattaagcttgcttgtgaactc 12991604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 9314765 - 9314804
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  9314765 taaaaagactctaaaaatagtgtatgactgactgtcatca 9314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 21633590 - 21633551
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  21633590 taaaaagactctaaaaatagtgtatgactgactgtcatca 21633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 22463554 - 22463515
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  22463554 taaaaagactctaaaaatagtgtatgactgactgtcatca 22463515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 28116979 - 28116940
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  28116979 taaaaagactctaaaaatagtgtatgactgactgtcatca 28116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 9840320 - 9840357
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcat 195  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  9840320 taaaaagactctaaaaatagtgaatgactggctgtcat 9840357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 2378475 - 2378435
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  2378475 ataaaaagactctaaaaatagcgaatgacggactgtcatca 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 13004611 - 13004643
Alignment:
Q  48 aaatcgtgacacgttttcgacaatcgtgacacg 80  Q
    |||||||||||||||||| ||||||||||||||    
T  13004611 aaatcgtgacacgttttcaacaatcgtgacacg 13004643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 15543255 - 15543215
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  15543255 ataaaaagactctaaaaatagcgaatgacggactgtcatca 15543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 35411856 - 35411676
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35411856 caatgtcgaatgaacctcatcctgtgttccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttctttgtt 35411757  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtg-aatgactgactgtcatca 197  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  || |||||| |||||||||||    
T  35411756 ttcttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgttgaaatgacagactgtcatca 35411676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 538194 - 538015
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  538194 caatgtcgaatgaacttcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 538095  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| |||| |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  538094 tctttgctgtttaaacttgtttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 23299374 - 23299553
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  23299374 caatgtcgaatgaacctcatcttgtgctccaaattgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttt 23299473  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23299474 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 16185477 - 16185656
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||| ||||| ||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  16185477 caatgtcgagtgaacctcatcctgtgctctaaaacgtgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttatatttttcttgctt 16185576  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||   ||||||| |||||||||||    
T  16185577 ttcttgctgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 16185656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 6922069 - 6921890
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||    
T  6922069 caatgttgaatgaacctcatcatgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttatatttctcttgttt 6921970  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  6921969 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 52198484 - 52198305
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  52198484 caatgtcgaatgaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgctt 52198385  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  52198384 tctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaacatagtgaatgactgactgtcatca 52198305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 10884197 - 10884018
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| | |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||    
T  10884197 caatgtcgaatgaacctaatcctgtgcttcaaatcgtgacaggttttcaacaatcgtgacacgattttgctttcttcgaaatcttctattttttttgttt 10884098  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10884097 tcattgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 18645562 - 18645741
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18645562 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 18645661  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| ||||||||| |||||||||   ||||||||| |||| ||||||||||| ||||||||||||| ||||||||    
T  18645662 tctttgctgtttaagcttgtttgtgaact-tgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 18645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 53815062 - 53814971
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53815062 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 10107489 - 10107614
Alignment:
Q  72 cgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacacta 170  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||| || |||||||||||||||||||| |||||||||| |||| |||||||    
T  10107489 cgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacacta 10107587  T
Q  171 aaaatagtgaatgactgactgtcatca 197  Q
    |||| ||||||||||||||||||||||    
T  10107588 aaaacagtgaatgactgactgtcatca 10107614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 29344618 - 29344773
Alignment:
Q  43 gctccaaatcgtgacacgtttt-cgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgt 141  Q
    ||||||||||||| |||||||| | | ||||||||||||||    |||| ||||   ||||| |||||||||| |||||||||||||||| |||||||||    
T  29344618 gctccaaatcgtgtcacgtttttcaataatcgtgacacgatccc-cttttttcagtttcttcaatttttcttgcttttcttgctgcttaatcttgcttgt 29344716  T
Q  142 gaactcaaaaatatcataa-aaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29344717 gaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 3839903 - 3839790
Alignment:
Q  87 ctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat---aaaaagacactaaaaatagtgaatg 183  Q
    ||||||||||  |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||| || ||||||||||||||||    
T  3839903 ctttcttcaatttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatg 3839804  T
Q  184 actgactgtcatca 197  Q
    ||||||||||||||    
T  3839803 actgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 16243257 - 16243166
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  16243257 tttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 9380102 - 9380012
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatc 196  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  9380102 tttttcttgcttttcttattgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 54460457 - 54460367
Alignment:
Q  107 ttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54460457 ttttctttcttttcttgttgcttaagattgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 34984668 - 34984758
Alignment:
Q  107 ttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  34984668 ttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 19302255 - 19302364
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||||||||||||| | ||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||   |||||| |    
T  19302255 tttcttcaaaatcttctatttttctcgctttccttgttgtttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacgg 19302354  T
Q  188 actgtcatca 197  Q
    ||| ||||||    
T  19302355 actatcatca 19302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 10880863 - 10880776
Alignment:
Q  110 tcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||    
T  10880863 tcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcaaataactgactgtcatca 10880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 41976412 - 41976321
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| ||| ||||||||||| |||| ||||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||    
T  41976412 tttttgttgcttttcttgctgtttaatcttgcttgtgaactcaaaaatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 54736759 - 54736842
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgac 189  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  54736759 ttttttttgcttttcttgttgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 20729395 - 20729477
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| |||||||||||||||||||    
T  20729395 ttttcttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 43808970 - 43808881
Alignment:
Q  105 atttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtca 194  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||| ||| |||||||    
T  43808970 attttttttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaataactaactgtca 43808881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 31548649 - 31548573
Alignment:
Q  99 tcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaat 175  Q
    ||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  31548649 tcttcaatttttcttgcttttcttactgcttaagcttggttgtgaactcaaaaatatcataaaaagactctaaaaat 31548573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 22994413 - 22994570
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacg-ttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggt 116  Q
    |||||||||||| || ||||  ||||||||||||||||||||| ||||| |||| |||| ||| ||||  |||||  || |||||||  ||||||||| |    
T  22994413 caatgtcgaatgcacctcattatgtgctccaaatcgtgacacgtttttcaacaaccgtgtcactatttcactttcaccacaatcttcagtttttcttgct 22994512  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaat 175  Q
    || ||||||| ||||||||||||||| |||| |||||||||||| |  |||||||||||    
T  22994513 ttccttgctgtttaagcttgcttgtggactc-aaaatatcataatattacactaaaaat 22994570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 17532565 - 17532669
Alignment:
Q  93 tcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactg 191  Q
    |||||||||||| ||||||||| |||  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||    
T  17532565 tcaaaatcttctttttttcttgttttctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactg 17532663  T
Q  192 tcatca 197  Q
    | ||||    
T  17532664 taatca 17532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 19305445 - 19305526
Alignment:
Q  95 aaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaata 176  Q
    |||| ||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  19305445 aaaaacttctatttttctcgctttccttgctgtttaagcttgcttgtgaactcaaaaatattataaaaagactctaaaaata 19305526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 55032789 - 55032833
Alignment:
Q  69 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032789 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 55032833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 9380194 - 9380143
Alignment:
Q  34 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttt 85  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  9380194 tcatcctgtgctctaaatcgtgacacgttttcaacaaccgtgacacgatttt 9380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 6445482 - 6445528
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgtttt 64  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  6445482 caatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgtttt 6445528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 31857091 - 31857055
Alignment:
Q  161 aaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31857091 aaagactctaaaaatagtgaatgactgactgtcatca 31857055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 50462415 - 50462455
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  50462415 ataaaaagactctaaaaatagtgaatgacggactgtcatca 50462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 9157547 - 9157508
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  9157547 taaaaagactctaaaaatagtgcatgactgactgtcatca 9157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 2280741 - 2280779
Alignment:
Q  159 aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  2280741 aaaaagactctaaaaatagtgcatgactgactgtcatca 2280779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 28265180 - 28265134
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgtttt 64  Q
    ||||||||||||||| ||||| |||||| ||||||||||||| ||||    
T  28265180 caatgtcgaatgaacttcatcatgtgcttcaaatcgtgacacatttt 28265134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 42355298 - 42355336
Alignment:
Q  159 aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  42355298 aaaaaaactctaaaaatagtgaatgactgactgtcatca 42355336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 53815151 - 53815105
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgtttt 64  Q
    ||||||||||||||| ||||||| || | ||||||||||||||||||    
T  53815151 caatgtcgaatgaacctcatcctatgtttcaaatcgtgacacgtttt 53815105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 55032758 - 55032800
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacg 60  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||    
T  55032758 caatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacg 55032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 43926164 - 43926124
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  43926164 ataaaaagactctaaaaatagcgaatgacggactgtcatca 43926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 15431343 - 15431164
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  15431343 caatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttt 15431244  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  15431243 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 15437957 - 15437778
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  15437957 caatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttt 15437858  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  15437857 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 18910783 - 18910604
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18910783 caatgtcgaatgaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctt 18910684  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || ||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  18910683 tctttgttgtttaagtttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 18910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 3798617 - 3798796
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||| || ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  3798617 caatgtcgaatgaacctcatcctttgttccaaatcgtgacacattttcaacaatcgtgacaagattttgctttcttcaaaatcttctatttttcttgctt 3798716  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  3798717 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 3798796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5721792 - 5721971
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5721792 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 5721891  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| ||||||||| |||||||||   ||||||||| |||| ||||||||||| ||||||||||||| ||||||||    
T  5721892 tctttgctgtttaagcttgtttgtgaact-tgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 5721971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 19865464 - 19865643
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  19865464 caatgtcgaatgaacctcatcctgtgctccaaatcgtgatacattttcaataatcgtgacacgattttgttttcttcaaaatcttctatttttcttgctt 19865563  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  19865564 tctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 19865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 33410783 - 33410962
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||| | |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33410783 caatgtcgaatgaacctcaccttgtgcttcaaatcgtaacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 33410882  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  33410883 tctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 33410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5680648 - 5680469
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||| || ||||| |||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  5680648 caatgtcgaatgaacctcattctatgctctaaattgtgacacgttttcaacaatcgtgacatgattttgcttttttcaaaatcttctatttttcttgctt 5680549  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||   ||||||| | |||||||||    
T  5680548 ttcttgttgtttaagcttgcttatgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagtctgtcatca 5680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5669807 - 5669628
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||| ||| ||||  |||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5669807 caatgtcgaataaacctcattttgtgtttcaaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 5669708  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  5669707 tctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 5669628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 9717130 - 9716951
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    |||||||||| |||| ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  9717130 caatgtcgaacgaacctcatcctgtgctctaaattgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttt 9717031  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  9717030 tctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgaccgactgtcatca 9716951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 19861108 - 19861286
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||  |||||||||||||| ||||||||||| ||    
T  19861108 caatgtcgaatgaacctcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacaattttgtgttcttcaaaatcttatatttttcttgctt 19861207  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatc 196  Q
    |  |||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||| ||| ||||    
T  19861208 tctttgctgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgtctgccatc 19861286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 40617633 - 40617762
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  40617633 caatgtcgaatgaacctcatcttgtgttctaaatcgtgacacgttttcaacaatcgtggcacgattttgccttcttcaaaatcttctatttttcttgctt 40617732  T
Q  118 ttcttgctgcttaagcttgcttgtgaactc 147  Q
    ||||||||||||||||||||||||||||||    
T  40617733 ttcttgctgcttaagcttgcttgtgaactc 40617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 12237533 - 12237354
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||  |  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  12237533 caatgtcgaatgaacctcatcctgtattttaaattgtgacacattttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgctt 12237434  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||| ||||||    
T  12237433 tctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgaatgactatcatca 12237354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 49269914 - 49269735
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||  ||||  ||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  49269914 caatgtcgaatgaatctcattttgttcttcaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgctt 49269815  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||| | ||||||||| |||  ||||||||||||||||||||| || ||||||||    ||||||||||||||||||    
T  49269814 tctttgccgtttaagcttgtttgctaactcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatca 49269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 14571144 - 14571026
Alignment:
Q  79 cgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagt 178  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  14571144 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtg 14571045  T
Q  179 gaatgactgactgtcatca 197  Q
    ||||||| ||| |||||||    
T  14571044 gaatgacagaccgtcatca 14571026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 53093900 - 53093767
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| | ||||| || ||    
T  53093900 caatgtcgaatgaacctcatcctgtgctccaattcgtgacacgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgctt 53093801  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    | ||||||| ||||||||||||||||||||||||    
T  53093800 tccttgctgtttaagcttgcttgtgaactcaaaa 53093767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 37104113 - 37104241
Alignment:
Q  69 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagaca 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| || |    
T  37104113 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgata 37104211  T
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| | ||||||||||||| ||||||||    
T  37104212 ctaaacacagtgaatgactgagtgtcatca 37104241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 18449231 - 18449136
Alignment:
Q  262 agtcgtgtgcttggatatctttacttaatgatgttagtgctattgagatgatgttgtagttctaagaatgatgtgataatttgttgatgatgatgt 357  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  18449231 agtcgtgtgcttggatatctttacttgatgatgttagtgcacttgagatgatgttgtagttgtaagaatgatgtgatgatttgttgatgatgatgt 18449136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 21419070 - 21418987
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgac 189  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21419070 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagcgaatgactgac 21418987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 3718427 - 3718336
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  3718427 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 12782197 - 12782106
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  12782197 tttttcttgcttttcttgctgcttaagcttgcttgtaaactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 40794283 - 40794200
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgac 189  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  40794283 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 29324088 - 29323979
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  29324088 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 29323989  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  29323988 actgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 44809795 - 44809904
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  44809795 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 44809894  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  44809895 actgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 44164090 - 44164001
Alignment:
Q  109 ttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcata-aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  44164090 ttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 52007350 - 52007431
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||    
T  52007350 ttttcttgctgcttaagcttgcttttgaactcaacaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 15430674 - 15430766
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  |||||||||||||||||||    
T  15430674 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 15437288 - 15437380
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  |||||||||||||||||||    
T  15437288 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 27013321 - 27013229
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcata-aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  27013321 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 53010377 - 53010458
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  53010377 ttttcttgctgcttaatcttacttgtgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27677874 - 27677966
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  27677874 ttttttttgcttttcttgctgcttaatcttgattgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 24044966 - 24045057
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||| |||| |||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||    
T  24044966 ttttccttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 34320738 - 34320839
Alignment:
Q  91 cttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgact 190  Q
    |||||||||||| |||||||| || ||| |||  || |||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  34320738 cttcaaaatcttgtatttttcatgctttccttattgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgact 34320837  T
Q  191 gt 192  Q
    ||    
T  34320838 gt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 56198137 - 56198029
Alignment:
Q  89 ttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||||||||||| || ||| |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  |||||||||    
T  56198137 ttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataacgaatgactg 56198039  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  56198038 actgtcatca 56198029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 19826793 - 19826701
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaa-tatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||| ||| |||||||||||||||| | |||||||||||| |||||||||| |||||||||||||||||||    
T  19826793 tttttcttgcttttcttgttgcttaatcttacttgtgaactcaaaaaatttcataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27691933 - 27692025
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||| | |||||||| ||||||||||||||||||| | ||||||||    
T  27691933 tttttcttgcttttcttgctgcttaatcttgcttgtgaattcaaaaatatcgtaaaaaagactctaaaaatagtgaatgactaattgtcatca 27692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 19820032 - 19819950
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaa-tatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||    
T  19820032 ttttcttgctacttaatcttgcttgtgaactcaaaaaatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 56194831 - 56194722
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    |||||||||||||||||||||||| || ||| |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  |||||| |    
T  56194831 tttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataacgaatgatt 56194733  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  56194732 gactgtcatca 56194722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 35509280 - 35509201
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| ||||  ||||||||||  |||||||||||||| ||||    
T  35509280 ttttcttgttgcttaatcttgcttgtgaactcaaaaatatcatataaag--actaaaaataacgaatgactgactgttatca 35509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 47114885 - 47114776
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||  || |||||||||||||||||||| |||| || || |||| |||||||||||||  ||||||||    
T  47114885 tttcttcaaaatcttgtatttttcatgttttccttattgtttaagcttgcttgtgaactc-aaaacataatgaaaatgacactaaaaataaagaatgact 47114787  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  47114786 gactgtcatca 47114776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 15405793 - 15405898
Alignment:
Q  92 ttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgact 190  Q
    ||||||||||| |||||||| ||  || |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  ||||||||||||    
T  15405793 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataaagaatgactgact 15405891  T
Q  191 gtcatca 197  Q
     ||||||    
T  15405892 ttcatca 15405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 33926230 - 33926121
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa-gacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||| |  |||||  ||| |||||||||| ||   |||||||    
T  33926230 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaagac-atcatgcaaatgacactaaaagtaacaaatgact 33926132  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  33926131 gactgtcatca 33926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 15812973 - 15813036
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    ||||||||||||||| |||||||| || ||| |||| || |||| |||||||||||||||||||    
T  15812973 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaa 15813036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 37104082 - 37104124
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacg 60  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  37104082 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacg 37104124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 37741471 - 37741512
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactc 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  37741471 tttttcttgtttttcttgctgtttaagcttgcttgtgaactc 37741512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 38284375 - 38284415
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  38284375 ataaaaagactctaaaaatagcgaatgactgactgtcatca 38284415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 17669475 - 17669447
Alignment:
Q  169 taaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||||||||||||||||    
T  17669475 taaaaatagtgaatgactgactgtcatca 17669447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 34018659 - 34018699
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  34018659 ataaaaagactctaaaaatagcgaatgacggactgtcatca 34018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 48416408 - 48416448
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  48416408 ataaaaagactctaaaaatagcgaatgacggactgtcatca 48416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 45156739 - 45156918
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  45156739 caatgtcgaatgaacctcatcctgtgctccaaatcgtgacacattttcaacaatcgtgacacgattgtgctttcttcaaaatcttctatttttcttgctt 45156838  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||   ||||||||||    
T  45156839 ttcttgctgctaaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatca 45156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5540816 - 5540995
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||  ||    
T  5540816 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacatgattttgcttccttcaaaatcttctatttttcttactt 5540915  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||   |||||||  ||||||||||    
T  5540916 gtcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacaaactgtcatca 5540995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 14421043 - 14420864
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    |||||| || ||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| ||    
T  14421043 caatgttgagtgaacctcatcctgtgttccaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttatatttttcttgctt 14420944  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||   ||||||  |||||||||||    
T  14420943 ttcttgttgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaatgtggaatgagagactgtcatca 14420864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 33878059 - 33878238
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||| ||| |||| ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33878059 caatgtcgaataaacctcattctgtgttctaaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 33878158  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  33878159 tctttgctgtttaaactttcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 33878238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 43682618 - 43682798
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43682618 caatgtcgaatgaacctcatcctgtgttccaaattgtgacacgttttcaataatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctt 43682717  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat--aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||| ||||||| ||||||||||  |||| || ||||||||||||||||||||||||| |||||    
T  43682718 tctttgctgtttaaacttgcttatgaactc-aaaatatcatgaaaaatgatactaaaaatagtgaatgactgactgccatca 43682798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 25595505 - 25595681
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggt 116  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  25595505 caatgtcgaatgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgtt 25595604  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtc 193  Q
    ||  ||| || |||||||||| ||||||||| |||||||||| |||| ||||||||||| | ||||||||||||||||    
T  25595605 ttctttgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacactaaaaacaatgaatgactgactgtc 25595681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 10663190 - 10663011
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||| ||||| ||||  ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10663190 caatgtcgattgaacctcattatgtgctccaaatcatgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctt 10663091  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||  ||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10663090 tctttgctgtttagacttgcttgtgaactc-aacatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 18722136 - 18722310
Alignment:
Q  23 tcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggttttct 121  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||  |    
T  18722136 tcgaatgaacctcatc-tgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctt 18722234  T
Q  122 tgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    || || |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  18722235 tgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 18722310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 25228191 - 25228049
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||||||||||| ||    
T  25228191 caatgtcgaatgaacctcatcatgtgctccaaatcgtgacacgttttcagcaatcgagacacgatttt--tttcttcaaaatcttctatttttcttgttt 25228094  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaa 162  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  25228093 ttcttgcttcttgagcttgcttgtgaactcaaaaatatcataaaa 25228049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 25592320 - 25592496
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggt 116  Q
    ||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  25592320 caatgtcgaatgaacctcatcatgtgctccaaatcgggacacattttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgtt 25592419  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtc 193  Q
    ||  ||| || |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  25592420 ttctttgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 25592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 18826725 - 18826834
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || ||||| |||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  18826725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagtttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 18826824  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  18826825 actgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 12582372 - 12582218
Alignment:
Q  43 gctccaaatcgtgacacgtttt-cgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgt 141  Q
    |||||||||||||||||||||| | | ||||||||||||||    |||| ||||   |||||  ||||||||| ||||||| |||||||| |||||||||    
T  12582372 gctccaaatcgtgacacgtttttcaataatcgtgacacgatccc-cttttttcagtttcttcagtttttcttgcttttctttctgcttaatcttgcttgt 12582274  T
Q  142 gaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||| |||||||||| |||||| ||| | ||||||    
T  12582273 gaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgattttcatca 12582218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 15662654 - 15662749
Alignment:
Q  262 agtcgtgtgcttggatatctttacttaatgatgttagtgctattgagatgatgttgtagttctaagaatgatgtgataatttgttgatgatgatgt 357  Q
    |||||||||||||||||| ||||||| |||||| ||||||  || |||| ||||||||||| ||||||||||||||| |||| |||||||||||||    
T  15662654 agtcgtgtgcttggatatatttacttgatgatgctagtgcactttagataatgttgtagttgtaagaatgatgtgatgatttattgatgatgatgt 15662749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 22174782 - 22174891
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || ||||||||||||||||||||||||| ||||| |||| |||||| |||||| |||||| ||    
T  22174782 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaaacatcatgaaaatgacact-aaaataatgaatggct 22174880  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  22174881 gactgtcatca 22174891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 30640598 - 30640505
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcata--aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||||||  ||||||  || |||||||||||||| ||||||||||||    
T  30640598 tttttcttgcatttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatca 30640505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 14589707 - 14589816
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| ||  ||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||    
T  14589707 tttcttcaaaatcttgtatttttcatgctttccttgttgtgtaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataatgaatgact 14589805  T
Q  187 gactgtcatca 197  Q
     ||| ||||||    
T  14589806 aactatcatca 14589816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 19793019 - 19792926
Alignment:
Q  106 tttttcttggttttcttgctgcttaagctt-gcttgtgaactcaaaaatatcata-aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||| | |||||||| || |||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||    
T  19793019 tttttctagcttttcttgttgtttaatctttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatca 19792926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 23612645 - 23612569
Alignment:
Q  121 ttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa-gacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| |||| ||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||    
T  23612645 ttgctgtttaaacttgcttgtgaactcaaaa-tctcatcaaaatgacactaaaaatagtgaatgactgactgtcatca 23612569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 5981150 - 5981220
Alignment:
Q  127 cttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtg-aatgactgactgtcatca 197  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||    
T  5981150 cttaaacttgcttgtgaactcaaaaatatcataaaaagactctaaaaat-gtgaaatgacggactgtcatca 5981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20520131 - 20520079
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaa 70  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  20520131 caatgtcgaatgaacctcatcctgtgttccaaatcgtgacacgttttcaacaa 20520079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 17895338 - 17895384
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgtttt 64  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  17895338 caatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgtttt 17895384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 38249248 - 38249312
Alignment:
Q  87 ctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    ||||||||||||||||  | ||||| || ||| ||||||| ||||||||||||||||| ||||||    
T  38249248 ctttcttcaaaatctttaacttttcatgttttccttgctgtttaagcttgcttgtgaattcaaaa 38249312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 20261686 - 20261647
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  20261686 taaaaagactctaaaaatagtgtatgactgactgtcatca 20261647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 21048316 - 21048277
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  21048316 taaaaagactctaaaaatagtgtatgactgactgtcatca 21048277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 30640682 - 30640624
Alignment:
Q  24 cgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgat 82  Q
    |||| |||| ||||| |||| ||||||  ||||||||||||| ||||||||||||||||    
T  30640682 cgaaagaacttcatcttgtgatccaaagtgtgacacgttttcaacaatcgtgacacgat 30640624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 16953038 - 16952998
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  16953038 ataaaaagactctaaaaatagcgaatgacggactgtcatca 16952998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 8276191 - 8276012
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||    
T  8276191 caatgtcgaatgaacctcatcatgtgctccaaatcgtgatacgttttcaacaatcatgacacgattttgttttcttcaaaatcttctatttttcttgctt 8276092  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||||    
T  8276091 ttcttgctgcttgagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 26556689 - 26556510
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||| ||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26556689 caatgtcgaataaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctt 26556590  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26556589 tctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 10431565 - 10431386
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  10431565 caatgtcgagtgaacctcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttt 10431466  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  10431465 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 4542252 - 4542074
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||| ||||||||||| |||||| ||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| ||    
T  4542252 caatgtcgaatgaac-tcatcctatgctccaaatcatgacacattttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttt 4542154  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  4542153 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 4542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 2442099 - 2442277
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||| ||||| ||||||| |||| |||||||||| |||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||| ||    
T  2442099 caatgtcgagtgaac-tcatcctatgcttcaaatcgtgatacgttttcaacaatcgtgacacgaatttgctttcctcagaatcttctatttttcttgttt 2442197  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  2442198 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacacttaaaatagtgaatgactgactgtcatca 2442277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 45288047 - 45288138
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45288047 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 45291383 - 45291474
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45291383 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 20081530 - 20081640
Alignment:
Q  87 ctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||  ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  20081530 ctttcttcaatttctttgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaacactctaaaaatagtgaatgact 20081629  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  20081630 gactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 17730071 - 17729973
Alignment:
Q  99 tcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  17730071 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 9865551 - 9865642
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  9865551 tttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 9080467 - 9080376
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||  |||||||| ||||||||||    
T  9080467 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaattacataaaaagactctaaaaataacgaatgactaactgtcatca 9080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 10344707 - 10344616
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||| |||||| |||||||    
T  10344707 ttttttttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatttcataagaagactctaaaaatagcgaattactgacagtcatca 10344616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 4596833 - 4596924
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||| ||| ||||||| |||||||||||||||||||||| |||||||||  |||||| ||||||||||||    
T  4596833 tttttcttgcttttcttgttgcttaatctttcttgtgagctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 4694814 - 4694723
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||   ||||||||||| ||||||    
T  4694814 tttttcttacttttcttgctgcttaatcttgcttgtgaactcaaaaatatcatagaaagactctaaaaataacaaatgactgactttcatca 4694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 9273882 - 9274003
Alignment:
Q  44 ctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtga 143  Q
    ||||||||||||||||||||||   |||||||||| ||||   |||||||||   ||||| | |||||||  |||||||| |||||||||||||||||||    
T  9273882 ctccaaatcgtgacacgttttcagtaatcgtgacatgattcc-ctttcttcagtttcttcaacttttctttcttttcttggtgcttaagcttgcttgtga 9273980  T
Q  144 actcaaaaatatcataaaaagac 166  Q
    |||| ||||||||||||||||||    
T  9273981 actccaaaatatcataaaaagac 9274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 16164998 - 16164889
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| |||| ||||| ||||  ||||||||||||  ||||||||    
T  16164998 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaattacactaaaaataacgaatgact 16164900  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  16164899 gactgtcatca 16164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 48644725 - 48644616
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| |||| || || |||| |||||||||||||  ||||||||    
T  48644725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacattatgaaaatgacactaaaaataaagaatgact 48644627  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  48644626 gactgtcatca 48644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 6602730 - 6602621
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| |  ||| |||| || |||||||||||||||||||  |||| || || || | |||||||||||||  ||||||||    
T  6602730 tttcttcaaaatcttgtatttttcatactttccttgttgtttaagcttgcttgtgaact-taaaacattatgaacatgacactaaaaataacgaatgact 6602632  T
Q  187 gactgtcatca 197  Q
    |||||||||||    
T  6602631 gactgtcatca 6602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 48645852 - 48645921
Alignment:
Q  128 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||  ||||| |||| |||||||||||||  |||||||||||||||||||    
T  48645852 ttaagcttgcttgtgaactcaaaac-atcatgaaaatgacactaaaaataaagaatgactgactgtcatca 48645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 37167030 - 37167070
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  37167030 ataaaaagactctaaaaatagcgaatgactgactgtcatca 37167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 11826392 - 11826430
Alignment:
Q  159 aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  11826392 aaaaagactctaaaaatagtgcatgactgactgtcatca 11826430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 18563366 - 18563396
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaact 146  Q
    |||||||||||||||||||||||||||||||    
T  18563366 ttttcttgctgcttaagcttgcttgtgaact 18563396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 13450736 - 13450765
Alignment:
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||    
T  13450736 ctaaaaatagtgaatgactgactgtcatca 13450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 37214945 - 37214766
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||    
T  37214945 caatgtcgaatgaacctcatcctgtgctccaaatcgtgacatgttttcaacaattgtgatacgattttgctttcttcaaaatcttctatttttcttgctt 37214846  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||| |||||| ||||    
T  37214845 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 37214766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 43490964 - 43490793
Alignment:
Q  26 aatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgct 125  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43490964 aatgaacctcatcctgtgctcctaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgcttttcttgct 43490865  T
Q  126 gcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtg-aatgactgactgtcatca 197  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||    
T  43490864 gcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaat-gtgaaatgacagactgtcatca 43490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 22937876 - 22938055
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||    
T  22937876 caatgtcgaatgaacctcatcttgtgctccaaatcgtgatacgttttcaacaaccgtggcacgattttgctttcttcaaaatcttctatttttcttgctt 22937975  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||| |||||||||||    
T  22937976 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaacgtggaatgacagactgtcatca 22938055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 32837262 - 32837083
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  32837262 caatgtcgaatgaaactcatcctatgctccaaatcgtgacacgttttcaacaatcatgacacgattttgctttcttcaaaatcttctatttttctttctt 32837163  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||  ||||||||||    
T  32837162 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacatactgtcatca 32837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 42061665 - 42061486
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42061665 caatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttt 42061566  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  42061565 tctttgctgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 42061486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 28442002 - 28442181
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    |||||| || ||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  28442002 caatgttgagtgaacctcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttt 28442101  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28442102 tctttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 28442181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 31863053 - 31862872
Alignment:
Q  16 aacaatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgg 115  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||     
T  31863053 aacaatgtcgaatgaacttcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaattttctatttttcttgc 31862954  T
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||  ||| || |||||||||||||||||||| ||||||| || |||| |||||||||||||  |||||||||||||||||||    
T  31862953 tttctttgttgtttaagcttgcttgtgaactc-aaaatattatgaaaatgacactaaaaataaggaatgactgactgtcatca 31862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 14376706 - 14376834
Alignment:
Q  69 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagaca 167  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||  ||| || |||| ||||||||||||||| |||||||||| |||| ||||    
T  14376706 aatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgatttctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgaca 14376804  T
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||    
T  14376805 ctaaaaatagtgaatgactgactgtcatca 14376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 28788309 - 28788401
Alignment:
Q  105 atttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  28788309 atttttcttgtttttcttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 14016927 - 14017036
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  14016927 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 14017026  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  14017027 actgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 21336650 - 21336742
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  21336650 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 21827949 - 21828041
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  21827949 tttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 17747726 - 17747617
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||| ||| ||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  17747726 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagctttcttatgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 17747627  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  17747626 actgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 39191422 - 39191333
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcat 195  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||||| ||||||||||    
T  39191422 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 40916795 - 40916889
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat---aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||| ||   |||||||| ||||||||||  ||||||||||||||||||    
T  40916795 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatgataaaaaaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 18031801 - 18031710
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||  ||||||| |||| ||||||    
T  18031801 tttttcttgcttttcttgctgcttaaacttgcttttgaactcgaaaatatcataaaaagactctaaaaatatggaatgacggactatcatca 18031710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 4100278 - 4100431
Alignment:
Q  43 gctccaaatcgtgacacgttttcgac-aatcgtgacacgat----tttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgc 137  Q
    ||||||||||||| |||||||| ||  ||||||||||||||    |||  ||||||||   |||||  |||| |||| |||||||||||||||| |||||    
T  4100278 gctccaaatcgtgtcacgtttttgagtaatcgtgacacgatccctttttttttcttcagtttcttcagttttccttgcttttcttgctgcttaatcttgc 4100377  T
Q  138 ttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgt 192  Q
     |||||||||||||||||||||||||||| || ||||||| |||| |||||||||    
T  4100378 ctgtgaactcaaaaatatcataaaaagactct-aaaatagcgaataactgactgt 4100431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 7270305 - 7270241
Alignment:
Q  133 cttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||    
T  7270305 cttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 2836761 - 2836702
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaat 175  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2836761 ttttcttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 2836702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 30065643 - 30065562
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||||  |||||| ||| ||||||||    
T  30065643 ttttcttgttgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 21336542 - 21336609
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttt 85  Q
    ||||||||||||||| ||||||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  21336542 caatgtcgaatgaacctcatcctgtgctctaaatcgtgacatgttttcaacaaccgtgacacgatttt 21336609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 2837584 - 2837641
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa 163  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  2837584 tttttcttgcttttattgctgcttaagcttgcttgtgaactccaaaatatcataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 21827841 - 21827908
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttt 85  Q
    ||||||||||||||| |||||||||| || |||||||||||||| ||| |||| ||||||||||||||    
T  21827841 caatgtcgaatgaacctcatcctgtgttctaaatcgtgacacgtattcaacaaccgtgacacgatttt 21827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 14376671 - 14376717
Alignment:
Q  14 ttaacaatgtcgaatgaacatcatcctgtgctccaaatcgtgacacg 60  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  14376671 ttaacaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacg 14376717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 25329505 - 25329456
Alignment:
Q  148 aaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||| || |||||||||| |||||||||||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatca 25329456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 7624366 - 7624303
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||| |||||||||||||    
T  7624366 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcctgtgaactcaaaa 7624303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 39191510 - 39191446
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgat 82  Q
    |||| |||||| ||| ||||||||| ||  |||| ||||||||||||| ||||||||||||||||    
T  39191510 caatatcgaataaacctcatcctgtactttaaattgtgacacgttttcaacaatcgtgacacgat 39191446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 41307405 - 41307445
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  41307405 ataaaaagactctaaaaatagcgaatgactgactgtcatca 41307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 33551425 - 33551385
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaact 146  Q
    ||||||||| |||||||||||||||| ||| ||||||||||    
T  33551425 tttttcttgcttttcttgctgcttaaacttacttgtgaact 33551385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 25870014 - 25869835
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||    
T  25870014 caatgtcgaatgaacttcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttt 25869915  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25869914 tctttgttgtttaaactttcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 25873382 - 25873203
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||    
T  25873382 caatgtcgaatgaacctcatcctgtgctccaaatcatgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttt 25873283  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25873282 tctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 38006107 - 38006286
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||    
T  38006107 caatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtcacacgattttgctttcttcaaaatcttctatttctcttgctt 38006206  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || ||||||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||||    
T  38006207 tctttgttgtttaagcttgtttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtaatca 38006286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 26358851 - 26358672
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||  |    
T  26358851 caatgccgaatgaacctcatcctgtgctccaaatcgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgtct 26358752  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  |||||| |||| ||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26358751 tctttgctgtttaaacttccttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26358672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 36809256 - 36809435
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| ||    
T  36809256 caatgtcgaatgaatctcatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttt 36809355  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  36809356 tctttgttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 36809435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 25139862 - 25140040
Alignment:
Q  19 aatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttt 118  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  25139862 aatgtctaatgaacctcatcttgtgctccaaatcgtgacacgttgtcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgcttt 25139961  T
Q  119 tcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
      |||| | |||||||| ||||||||||||||||||||||||||| || |||||| |   |||||||||||||||||||    
T  25139962 ctttgccgtttaagcttacttgtgaactcaaaaatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 25821738 - 25821922
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttc-aaaatcttctatttttcttggt 116  Q
    ||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |    
T  25821738 caatgtcgaatgaacctcatcctgtgttccaaatcgtgacaccttttcaacaatcttgacacgattttgctttcttcaaaaatcttctatttttcttgtt 25821837  T
Q  117 tttcttgctgcttaagcttgcttgtgaactcaaaa---atatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||  ||| || ||||||||||||||||||||||||   ||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  25821838 ttctttgttgtttaagcttgcttgtgaactcaaaatatatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 25821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 16788567 - 16788389
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    |||| |||||| |||  ||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| ||    
T  16788567 caatatcgaataaactccatcctgcgctctaaatcgtgacacgttttcaacaatcgtgacacgattgtgctttcatcaaaatcttatatttttcttgctt 16788468  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||||  ||||||||||  ||||||||||||||||||    
T  16788467 ttcttgttgcttaagcttgcttgtgaactcaaaattatcat-aaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 30275513 - 30275691
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||    
T  30275513 caatgtcgaatgaac-tcatcctacgctccaaatcgtgacacgttttcaacaatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgttt 30275611  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||| |||| ||||||| || |||||||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  30275612 tctttgttgtttaaacttgtttgtgaattc-aaaatatcatgaaaatgacactaaaaatattgaatgactgactatcatca 30275691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 15466298 - 15466170
Alignment:
Q  69 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagaca 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||  ||| || |||||||||||||||||||| |||||||||| |||| ||||    
T  15466298 aatcgtgacacgattttgctttcttcaaaatcttctatttctcttgatttctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgaca 15466200  T
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||| ||||||||    
T  15466199 ctaaaaatagtgaatgactgattgtcatca 15466170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 10600042 - 10599951
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  10600042 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 38014745 - 38014636
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  38014745 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactg 38014646  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  38014645 actgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 3874573 - 3874482
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  3874573 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 31430529 - 31430638
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||     
T  31430529 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgacta 31430628  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  31430629 actgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 5665905 - 5665830
Alignment:
Q  122 tgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  5665905 tgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 43722985 - 43722904
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||    
T  43722985 ttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 13972725 - 13972813
Alignment:
Q  109 ttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||    
T  13972725 ttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 5105032 - 5104953
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  5105032 ttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaaactctaaaa--agtgaatgactgactgtcatca 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 13136853 - 13136764
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcat 195  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||   ||||||||||||||||    
T  13136853 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcataaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 29439723 - 29439597
Alignment:
Q  69 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagaca 167  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |||  |||||| |||| |||||||||||||||   || ||||| |||| ||||    
T  29439723 aatcgtgacacgattttgctttcttcgaaatcttctttttttcttgttttctttgctgtttaaacttgcttgtgaactc---aacatcatgaaaatgaca 29439627  T
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| ||  ||||||| |||||||||||    
T  29439626 ctaaaattaacgaatgacggactgtcatca 29439597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 36985626 - 36985732
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    |||||||||||||||||||||||  || ||| |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  ||||||||    
T  36985626 tttcttcaaaatcttctattttttctgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataacgaatgact 36985724  T
Q  187 gactgtca 194  Q
    ||||||||    
T  36985725 gactgtca 36985732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 6826055 - 6825974
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||  |||| |||  |||||| ||||||||||||    
T  6826055 ttttcttgatgcttaatcttgcttgtgaactcaaaaatatcataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 45453160 - 45453051
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| |||| ||||| |||| ||| |||||||||  ||||||||    
T  45453160 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgaccctaaaaataaagaatgact 45453062  T
Q  187 gactgtcatca 197  Q
    || ||||||||    
T  45453061 gattgtcatca 45453051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 31428340 - 31428414
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaa 162  Q
    ||||||||||||||| |||||||| || ||| |||| || |||| ||||||||||||||||||| ||||||||||    
T  31428340 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaattatcataaaa 31428414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 45456409 - 45456300
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || |||  ||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  ||||| ||    
T  45456409 tttcttcaaaatcttgtatttttcatgctttctttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataaagaatggct 45456311  T
Q  187 gactgtcatca 197  Q
    || ||||||||    
T  45456310 gattgtcatca 45456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 10600142 - 10600091
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgaca 69  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||| ||||    
T  10600142 caatgtcgaatgaacctcatcctatgttccaaatcgtgacacgtttttgaca 10600091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 9189532 - 9189572
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  9189532 ataaaaagactctaaaaatagcgaatgactgactgtcatca 9189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 37280556 - 37280596
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  37280556 ataaaaagactctaaaaatagcgaatgactgactgtcatca 37280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 43208769 - 43208809
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  43208769 ataaaaagactctaaaaatagcgaatgactgactgtcatca 43208809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 29439754 - 29439712
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacg 60  Q
    |||| |||||||||| |||||||||||| ||||||||||||||    
T  29439754 caatatcgaatgaacttcatcctgtgcttcaaatcgtgacacg 29439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 31586785 - 31586823
Alignment:
Q  159 aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  31586785 aaaaagactctaaaaatagcgaatgactgactgtcatca 31586823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 1504290 - 1504318
Alignment:
Q  169 taaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||||||||||||||||    
T  1504290 taaaaatagtgaatgactgactgtcatca 1504318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 1507492 - 1507520
Alignment:
Q  169 taaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||||||||||||||||||||||    
T  1507492 taaaaatagtgaatgactgactgtcatca 1507520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 8887882 - 8887842
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  8887882 ataaaaagactctaaaaatagcgaatgacggactgtcatca 8887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 25957323 - 25957363
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  25957323 ataaaaagactctaaaaatagcgaatgacggactgtcatca 25957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 40780698 - 40780658
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||| ||||||||||||    
T  40780698 ataaaaagactctaaaaatagcgaatgattgactgtcatca 40780658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 29644129 - 29644308
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  29644129 caatgtcgaatgaatctcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacgattttactttcttcaaagtcttctatttttcttgctt 29644228  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||   ||||||| |||||||||||    
T  29644229 tttttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctataaatgtggaatgacagactgtcatca 29644308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 2793478 - 2793299
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  2793478 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttt 2793379  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatca-taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  || ||| |||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  2793378 tctttactgtttaaacttgcttgtgaactc-aaaatatcattaaaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 1951169 - 1951345
Alignment:
Q  21 tgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggttttc 120  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||      
T  1951169 tgtcgaatgaacctcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttctttgaaatcttctatttttcttgttttct 1951268  T
Q  121 ttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||| |||| ||||||||||||||| || ||||||| |||| || ||| |||||||||||||||||||||||||||    
T  1951269 ttgctgtttaaacttgcttgtgaactc-aagatatcatgaaaatgatacttaaaatagtgaatgactgactgtcatca 1951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 49499389 - 49499568
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  49499389 caatgtcgaatgaacctcatcatatgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgttt 49499488  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||| ||||||||| |||||||||| ||||  |||||||||| || |||||||||||||||||||    
T  49499489 tctttgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaataacactaaaaacagcgaatgactgactgtcatca 49499568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 34733084 - 34733217
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||| ||||||||| ||||||||||||||||| | ||||| || ||    
T  34733084 caatgtcgaatgaacctcatcctgtgctccaaatcctgacatgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgatt 34733183  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    | ||| ||| |||| |||||||||||||||||||    
T  34733184 tccttactgtttaatcttgcttgtgaactcaaaa 34733217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 41059135 - 41059234
Alignment:
Q  99 tcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  41059135 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 2404809 - 2404722
Alignment:
Q  110 tcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  2404809 tcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatattataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 45961598 - 45961707
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| |||||||| ||||| ||||||||||  ||||||||    
T  45961598 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataacaagactctaaaaatagcaaatgactg 45961697  T
Q  188 actgtcatca 197  Q
    ||||||||||    
T  45961698 actgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 27537104 - 27537212
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactg 187  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||||||    
T  27537104 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcataaaaagactataaaaatagcaaatgactg 27537203  T
Q  188 actgtcatc 196  Q
    |||||||||    
T  27537204 actgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 21019287 - 21019367
Alignment:
Q  116 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  21019287 ttttcttgctgcttaagcttggttgcgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 42021902 - 42021721
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacac-gttttcgacaatcgtgacacgattttgctttcttcaaaatcttc--tatttttcttg 114  Q
    ||||||||||||||| ||||||  ||||||||||||||||||  |||||   ||||||||||||| |   || | ||||   |||||  | |||||||||    
T  42021902 caatgtcgaatgaacctcatccgatgctccaaatcgtgacacatttttcagtaatcgtgacacga-tgccctcttttcagtttcttcaatttttttcttg 42021804  T
Q  115 gttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
     |||| ||||||||||| ||||||||||||||||  ||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  42021803 cttttattgctgcttaaacttgcttgtgaactcagtaatattataaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 21108302 - 21108393
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||| |||||| ||||||| |||  ||||||||||||||| ||||| ||||||| || |||||||||||||||||||    
T  21108302 tttttcttgcttttcttgcagcttaatcttgcttttgagttcaaaaatatcataagaagactctaaaaagagcgaatgactgactgtcatca 21108393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 31204123 - 31204014
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    ||||||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| |||| || || |||| |||||||||||||  ||||||||    
T  31204123 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacataatgaaaatgacactaaaaataaagaatgact 31204025  T
Q  187 gactgtcatca 197  Q
    |||| ||||||    
T  31204024 gactatcatca 31204014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 6071791 - 6071854
Alignment:
Q  88 tttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 151  Q
    ||||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||    
T  6071791 tttcttcaaaatcttgtatttttcatgtttttcttgttgtttaagcttgcttgtgaactcaaaa 6071854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 47708778 - 47708817
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  47708778 taaaaagactctaaaaatagtgaatgactgactgtcatca 47708817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 22460406 - 22460443
Alignment:
Q  160 aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22460406 aaaagactctaaaaatagtgaatgactgactgtcatca 22460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 45940661 - 45940621
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  45940661 ataaaaagactctaaaaatagcgaatgactgactgtcatca 45940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 3088696 - 3088735
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  3088696 taaaaagactctaaaaatagtgcatgactgactgtcatca 3088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 22454290 - 22454319
Alignment:
Q  168 ctaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||||||||||||||||||||    
T  22454290 ctaaaaatagtgaatgactgactgtcatca 22454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 49147150 - 49147113
Alignment:
Q  160 aaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  49147150 aaaagactctaaaaatagtgaatgattgactgtcatca 49147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 28110323 - 28110283
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  28110323 ataaaaagactctaaaaatagcgaatgacggactgtcatca 28110283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 37184743 - 37184783
Alignment:
Q  157 ataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  37184743 ataaaaagactctaaaaatagcgaatgacggactgtcatca 37184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 61776 - 61597
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||    
T  61776 caatgtcgaatgaacctcatcttgtgtttcaaatcgtgacacgttttcgacaatcgtgacacgattttgctttctttaaaatcttctatttctcttgatt 61677  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |  ||| || |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  61676 tctttgttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 61597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 197410 - 197242
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||           ||| |||||||||||||||||||||||||||| ||    
T  197410 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaat-----------tttactttcttcaaaatcttctatttttcttgctt 197322  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||   ||||||| |||||||||||    
T  197321 ttcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 197242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 291142 - 290974
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| ||    
T  291142 caatgtcgaatgaaccttatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttt 291043  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgact 186  Q
    |  ||| || |||| ||||||||||||||  |||||||||| |||| |||||||||||||||||||||||    
T  291042 tctttgttgtttaaacttgcttgtgaact-taaaatatcatgaaaatgacactaaaaatagtgaatgact 290974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 246232 - 246350
Alignment:
Q  79 cgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagt 178  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  246232 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtg 246331  T
Q  179 gaatgactgactgtcatca 197  Q
    ||||||| ||| |||||||    
T  246332 gaatgacagaccgtcatca 246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 26424 - 26277
Alignment:
Q  18 caatgtcgaatgaacatcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttggtt 117  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |    
T  26424 caatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatt---------t 26334  T
Q  118 ttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaa 174  Q
    ||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  26333 ttcatgctgcttatgtttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 26277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 4654 - 4563
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4654 tttttcttgattttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 969 - 1060
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||    
T  969 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 4329 - 4420
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||    
T  4329 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaagtagcgaatgactgactgacatca 4420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 11459 - 11550
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||    
T  11459 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaagtagcgaatgactgactgacatca 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 18588 - 18463
Alignment:
Q  73 gtgacacgattttgctttcttcaaaa-tcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacacta 170  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||  ||| || |||||||||| ||||||||| |||||||||| |||| |||||||    
T  18588 gtgacacgtttttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgcatgtgaactc-aaaatatcatgaaaatgacacta 18490  T
Q  171 aaaatagtgaatgactgactgtcatca 197  Q
    |||| ||||||||||||||||||||||    
T  18489 aaaacagtgaatgactgactgtcatca 18463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 6462 - 6554
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  6462 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 4790 - 4880
Alignment:
Q  107 ttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    |||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  4790 ttttctttctttttttgctgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 89071 - 88965
Alignment:
Q  91 cttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgac 189  Q
    ||||||||||||||||||||| || ||| |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  |||||||||||    
T  89071 cttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataacgaatgactgac 88973  T
Q  190 tgtcatca 197  Q
    ||||||||    
T  88972 tgtcatca 88965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 1136 - 1045
Alignment:
Q  106 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagtg-aatgactgactgtcatca 197  Q
    ||||||||| |||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  1136 tttttcttgcttttcttggtgcttaagcttccttatgaactccaaaatatcataaaaagactctaaaaat-gtgaaatgactgactgtcatca 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 369 - 474
Alignment:
Q  92 ttcaaaatcttctatttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagtgaatgactgact 190  Q
    ||||||||||| |||||||| ||  || |||| || |||||||||||||||||||| |||| ||||| |||| |||||||||||||  ||||||||||||    
T  369 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataaagaatgactgact 467  T
Q  191 gtcatca 197  Q
     ||||||    
T  468 ttcatca 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 7016 - 7055
Alignment:
Q  158 taaaaagacactaaaaatagtgaatgactgactgtcatca 197  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7016 taaaaagactctaaaaatagtgaatgactgactgtcatca 7055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University