View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_high_1 (Length: 753)
Name: NF18105_high_1
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 34549582 - 34550027
Alignment:
| Q |
15 |
cagagaccctaactaataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctatagtgatgattaacgcacttgtttca |
114 |
Q |
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| T |
34549582 |
cagagaccctaactaataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctataatgatgattaacgca-ttgtttca |
34549680 |
T |
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| Q |
115 |
tatacattgatggatatccccacccaacttaattgatggttccttcgcagaaaagaccttgagtttggtaggtatggaatcaaagcaggggtagagtggt |
214 |
Q |
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| T |
34549681 |
tatacattgatggatatccccacccaacttaattgatggttccttcgcagaaaacaccttgagtttggtaggtatggaatcaaagcaggggtagagtggt |
34549780 |
T |
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| Q |
215 |
tttgtgaatgagtctgaaatttgtaagacctaggaacatgcaaaataatgagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaat |
314 |
Q |
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| T |
34549781 |
ttagtgaatgagtctgaaatttgtaagacctaggaacatgcaacataacaagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaat |
34549880 |
T |
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| Q |
315 |
gtgctttgggtgaggggc-----acagcactttaattatcacaagggttagggtatgcatcaaggctcaaagagtgtttacagagttacctacaaagact |
409 |
Q |
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| T |
34549881 |
gtgctttgggtgagggccgggccacaacactttaattatcacaagggttagggtaggcatcaaggctcaaagagtgtttacagagttacctacaaaggct |
34549980 |
T |
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| Q |
410 |
cacggatttggtttacacaagtttttggcataagttttgatcgtgct |
456 |
Q |
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| T |
34549981 |
cacggatttggtttacacaagtttttggcataagttttgatcgtgct |
34550027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 541 - 735
Target Start/End: Original strand, 34550053 - 34550247
Alignment:
| Q |
541 |
ttaatacatgatatagatatgcttcattaattattgatacacgatttatatagcataataacggctggctaagcaggagtttatttaattaatacaaaca |
640 |
Q |
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| T |
34550053 |
ttaatacatgatataaatatgcttcattaattattgatacacgattcatataacataataacggctggctaagcaggagtttatttaattaatacaaaca |
34550152 |
T |
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| Q |
641 |
cacatcggtgattatatgttaaaatatcctgccttgcatgttaagtaaccatcaaacaagcttatggcctgaatgtgttccatgagtgaccattt |
735 |
Q |
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| T |
34550153 |
cacatcggtgatcatatgttaagatatcctgccttgcatgttaagtaaccatcaaacaagcttatggcctgaatgtgttccatgagtgaccattt |
34550247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 590
Target Start/End: Original strand, 34546593 - 34546702
Alignment:
| Q |
482 |
tctcaacaacaaaagtttaaacaacaaatagtacaataattcatcacatgttcattaatttaa-tacatgatatagatatgcttcattaattattgatac |
580 |
Q |
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| T |
34546593 |
tctcaacaacaaaagtttaaaaaacaaacattacaataactcatggcttgttaattaatttaaatacatgttattcatatgcttcattaattattgatac |
34546692 |
T |
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| Q |
581 |
acgatttata |
590 |
Q |
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| T |
34546693 |
aagatttata |
34546702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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