View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_high_10 (Length: 313)
Name: NF18105_high_10
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 15854750 - 15854469
Alignment:
| Q |
1 |
tctgctttacttatctggattctgggcttcatgctctatggtgattaactaaattaaaaattaatatttcatgattaataatgaaatagggaatactcgg |
100 |
Q |
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| T |
15854750 |
tctgctttacttatctggattctggccttcatgctctatggtgattaactaaattaaaaattaatatttcatgattaata-------------------- |
15854671 |
T |
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| Q |
101 |
ttgtgatgatggagttgatgatttgaactttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttcataatttcatgacat |
200 |
Q |
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| T |
15854670 |
--gtgatgacggagttgatgatttgaactttgtttcaggggggaggatgattatatgcctggaaacattatagagatagaacttcataatttcatgacat |
15854573 |
T |
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| Q |
201 |
ttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggcct |
300 |
Q |
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| T |
15854572 |
ttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggcct |
15854473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 10690663 - 10690864
Alignment:
| Q |
99 |
ggttgtgatgatggagttgatgatttgaactttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttcataatttcatgac |
198 |
Q |
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| T |
10690663 |
ggttgtgactatggagttgatgagttgagttttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgaacttcataatttcatgac |
10690762 |
T |
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| Q |
199 |
atttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggc |
298 |
Q |
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| T |
10690763 |
atttgattacttaaaatgtaaacccgggcctcggttgaatctcgtaattgggccaaatggttctggaaagagttctcttgtatgtgctattgctcttggc |
10690862 |
T |
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| Q |
299 |
ct |
300 |
Q |
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|| |
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| T |
10690863 |
ct |
10690864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 129 - 300
Target Start/End: Original strand, 47430585 - 47430756
Alignment:
| Q |
129 |
tttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttcataatttcatgacatttgattacctaaaatgtaaacctggacc |
228 |
Q |
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| T |
47430585 |
tttgtttcaggggggaggatgattatatgcctggaaacattttagaaatcgagcttcataatttcatgacatttgattacttaaaatgtaaacccgggcc |
47430684 |
T |
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| Q |
229 |
tcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggcct |
300 |
Q |
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| T |
47430685 |
tcgcttgaatcttgtaattggtccaaatggttctggaaagagttctcttgtatgtgctattgctcttggcct |
47430756 |
T |
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