View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18105_high_13 (Length: 252)
Name: NF18105_high_13
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 43054408 - 43054261
Alignment:
| Q |
90 |
atcttgttatataagtctaagacggaagtataagctaccaaataaattattcatacgttgcgttgcggttttg-attttgatgaatgtattttatttaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
43054408 |
atcttgttatataagtctaagacggaagtataagataccaaataaattattcatacgttgcgttgcggttttttattttgattaatgtattttatttaaa |
43054309 |
T |
|
| Q |
189 |
ttctcatgtttatgagacccgtcaatttaattttaagggtatatatat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054308 |
ttctcatgtttatgagacccgtcaatttaattttaagggtatatatat |
43054261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43054497 - 43054458
Alignment:
| Q |
1 |
tcttcaaggttcaacaatgtcacttttatcattaaaaaac |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054497 |
tcttcaaggttcaacaatgtcacttttatcattaaaaaac |
43054458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University