View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18105_high_3 (Length: 633)
Name: NF18105_high_3
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 42926263 - 42925648
Alignment:
| Q |
1 |
attcctgttactcaagcaaatatgacannnnnnngaagaaggaccactttatttgtgtgatgattcactaattagaagctatgatgatgcagaggatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926263 |
attcctgttactcaagcaaatatgacatttttt-gaagaaggaccactttatttgtgtgatgattcactaattagaagctatgatgatgcagaggatttg |
42926165 |
T |
|
| Q |
101 |
gttactttcttcaacaaggaacaataaaattatgatataaagcatcattcagcattgtaccttttatagttgttttcttgtgtttcagcaacagaggtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926164 |
gttactttcttcaacaaggaacaataaaattatgatataaagcatcattcagcattgtaccttttatagttgttttcttgtgtttcagcaacagaggtta |
42926065 |
T |
|
| Q |
201 |
atgtgtctaatggttgtaatacgatggaagtaattcagagggcattgctctaaaatcatttcattaaaaaataaggaccatttggttttattcatctatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926064 |
atgtgtctaatggttgtaatacgatggaagtaattcagagggcattgctctaaaatcatttcattaaaaaataaggaccatttggttttattcatctatt |
42925965 |
T |
|
| Q |
301 |
tttggttactt-gagatatctccctttttacatttggtaaatattttggagatcaaatagaaaagctcataaggtttatccagattatgagaattcaaaa |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42925964 |
tttggttactttgagatatctccctttttacatttggtaaatattttggagatcaaatagaaaagctcataaggtttatccagattatgagaattcaaaa |
42925865 |
T |
|
| Q |
400 |
gatatatcttacgctatatgcccttacataaaatgctaattcactacaaccatactgatgtagttctaattctatatacgaaatcctacctacacagcaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42925864 |
gatatatcttacgctatatgcccttacataaaatgctaattcactacaaccatactgatgtagttctacttctatatacgaaatcctacctacacagcaa |
42925765 |
T |
|
| Q |
500 |
tggacatcttgattttcttaatagtggtgagggagtaagaaaatgaagggcacgacaaagacgatgagggtcacagtaaaggagaagaaggatcgtctca |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42925764 |
tggacatcttgattttcttaatagtggtgagggagtaagaaaatgaagggcacgacaaagacgatgagggtcacagtaaaggagaagaaggatcgtctca |
42925665 |
T |
|
| Q |
600 |
gtaatggaggataatta |
616 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42925664 |
gtaatggaggataatta |
42925648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University