View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_high_4 (Length: 445)
Name: NF18105_high_4
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 12922145 - 12921727
Alignment:
| Q |
13 |
aatatgataacagaattttcaatgaaaacagaatgttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatct |
112 |
Q |
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| T |
12922145 |
aatatgataacagaattttcaatgataacagaattttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatct |
12922046 |
T |
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| Q |
113 |
taagaggagaggatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagat |
212 |
Q |
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| T |
12922045 |
tgagaggagaggatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagat |
12921946 |
T |
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| Q |
213 |
ttacgtgcagcaagatcttattcatttaatgcnnnnnnnnnnnnggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctc |
312 |
Q |
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| T |
12921945 |
ttacgtgcagcaagatcttattcatttaatgcttttttatttttggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctc |
12921846 |
T |
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| Q |
313 |
tgtttgcaacatacggtttcttgatatggaaatcagaagtgaagatttttgctatataaaaataaaattaatccctcnnnnnnnnncaaatttaggtcag |
412 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12921845 |
tgtttgcaacacacggtttcttgatatggaaatcagaagtgaagatttttgctatataaaaataaaattaatccctcaaaaaaaaacaaatttaggtcag |
12921746 |
T |
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| Q |
413 |
ttagatccagccaattcac |
431 |
Q |
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| T |
12921745 |
ttagatccagccaattcac |
12921727 |
T |
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