View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_low_11 (Length: 355)
Name: NF18105_low_11
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 43054268 - 43053962
Alignment:
| Q |
21 |
atatatatatcagcaatagcaaaagatttaaagctatataaaaaattggtcatgttttgacttaagaagatttttggttaataaatttcatcaaacaata |
120 |
Q |
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| T |
43054268 |
atatatatatcagcaatagcaaaagatttaaagctatataaaaaattggtcatgttttgacttaagaagattagtggttaataaatttcatca------- |
43054176 |
T |
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| Q |
121 |
aattgttgagaagaatttgagtataaatttatgggtagaaaagctattggtcaaacttacctctgttcaaactttggattataagtatctccnnnnnnna |
220 |
Q |
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| T |
43054175 |
---tgttgagaagaatttgagtataaaaatttcggtagaaaagttattggtcagatttacctccgttcaaactttggattataaggatcttcttttttta |
43054079 |
T |
|
| Q |
221 |
agaaccgaatggttaaaacnnnnnnnttgtcatgtttccaacaatgaatcatttgaaactgggaagagatattgagtattgacctcttaaaaagtcccta |
320 |
Q |
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|||| ||||||||||| || || |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43054078 |
agaatcgaatggttaacacaaaaaaattatcatgtttccaacaatgaatcagttgaaaccgggaagagatattgagtattgacctcttaaaaagtcccta |
43053979 |
T |
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| Q |
321 |
tttcgtagtgataaaaa |
337 |
Q |
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| T |
43053978 |
tttcgtagtgataaaaa |
43053962 |
T |
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