View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18105_low_17 (Length: 247)

Name: NF18105_low_17
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18105_low_17
NF18105_low_17
[»] chr2 (2 HSPs)
chr2 (162-244)||(38940577-38940659)
chr2 (162-206)||(38940728-38940772)
[»] chr4 (9 HSPs)
chr4 (168-206)||(55759167-55759204)
chr4 (208-245)||(55757710-55757747)
chr4 (208-245)||(55757884-55757921)
chr4 (208-245)||(55758058-55758095)
chr4 (208-245)||(55758232-55758269)
chr4 (208-245)||(55758406-55758443)
chr4 (208-245)||(55758580-55758617)
chr4 (208-245)||(55758750-55758787)
chr4 (208-245)||(55759098-55759135)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 38940577 - 38940659
Alignment:
Q  162 cactcataaccttttgtttaagattgttgatatttagtacttgatatgattaatttttcaccatgatctttgagtataatcta 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38940577 cactcataaccttttgtttaagattgttgatatttagtacttgatatgattaatttttcaccatgatctttgagtataatcta 38940659  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 38940728 - 38940772
Alignment:
Q  162 cactcataaccttttgtttaagattgttgatatttagtacttgat 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  38940728 cactcataaccttttgtttaagattgttgatatctagtacttgat 38940772  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 55759204 - 55759167
Alignment:
Q  168 taaccttttgtttaagattgttgatatttagtacttgat 206  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  55759204 taaccttttgttta-gattgttgatatttagtacttgat 55759167  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55757747 - 55757710
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55757747 tgattgatttttcaccataatctttgagtataatctac 55757710  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55757921 - 55757884
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55757921 tgattgatttttcaccataatctttgagtataatctac 55757884  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55758095 - 55758058
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758095 tgattgatttttcaccataatctttgagtataatctac 55758058  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55758269 - 55758232
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758269 tgattgatttttcaccataatctttgagtataatctac 55758232  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55758443 - 55758406
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758443 tgattgatttttcaccataatctttgagtataatctac 55758406  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55758617 - 55758580
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758617 tgattgatttttcaccataatctttgagtataatctac 55758580  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55758787 - 55758750
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758787 tgattgatttttcaccataatctttgagtataatctac 55758750  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 55759135 - 55759098
Alignment:
Q  208 tgattaatttttcaccatgatctttgagtataatctac 245  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55759135 tgattgatttttcaccataatctttgagtataatctac 55759098  T

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