View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18105_low_19 (Length: 227)

Name: NF18105_low_19
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18105_low_19
NF18105_low_19
[»] chr4 (11 HSPs)
chr4 (33-222)||(34662353-34662541)
chr4 (38-143)||(26832591-26832696)
chr4 (38-143)||(26433880-26433985)
chr4 (38-143)||(26435660-26435765)
chr4 (38-142)||(23868589-23868693)
chr4 (38-143)||(23885683-23885788)
chr4 (50-142)||(23453701-23453793)
chr4 (50-143)||(24307079-24307172)
chr4 (50-142)||(23401931-23402023)
chr4 (39-142)||(23416024-23416127)
chr4 (50-142)||(23408869-23408961)
[»] chr2 (1 HSPs)
chr2 (94-142)||(14715372-14715420)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 34662353 - 34662541
Alignment:
Q  33 ccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662353 ccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcag 34662452  T
Q  133 gtttcttctctccctttggtgccgttgaatggattgggaatttggaaactggtgattgtttgtttgtttagattgatgcggtgtgtttat 222  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34662453 gtttcttctctccctttggtgccattgaatggattgggaatttggaaactggtgattgtttgtttgtttagattgatgcgg-gtgtttat 34662541  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26832696 - 26832591
Alignment:
Q  38 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 137  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26832696 ggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26832597  T
Q  138 ttctct 143  Q
    ||||||    
T  26832596 ttctct 26832591  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26433985 - 26433880
Alignment:
Q  38 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 137  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26433985 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26433886  T
Q  138 ttctct 143  Q
    ||||||    
T  26433885 ttctct 26433880  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26435765 - 26435660
Alignment:
Q  38 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 137  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  26435765 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttc 26435666  T
Q  138 ttctct 143  Q
    ||||||    
T  26435665 ttctct 26435660  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 23868693 - 23868589
Alignment:
Q  38 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 137  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  23868693 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttc 23868594  T
Q  138 ttctc 142  Q
    |||||    
T  23868593 ttctc 23868589  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 23885788 - 23885683
Alignment:
Q  38 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc 137  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||    
T  23885788 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttc 23885689  T
Q  138 ttctct 143  Q
    ||||||    
T  23885688 ttctct 23885683  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 23453701 - 23453793
Alignment:
Q  50 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 142  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  23453701 ttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 24307172 - 24307079
Alignment:
Q  50 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctct 143  Q
    ||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  24307172 ttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtttcttctct 24307079  T

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Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 23402023 - 23401931
Alignment:
Q  50 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 142  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  23402023 ttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23401931  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 23416024 - 23416127
Alignment:
Q  39 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 138  Q
    |||||||| | ||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||    
T  23416024 gctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtttct 23416123  T
Q  139 tctc 142  Q
    ||||    
T  23416124 tctc 23416127  T

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Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 23408869 - 23408961
Alignment:
Q  50 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 142  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  23408869 ttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttctc 23408961  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
Q  94 gagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 142  Q
    ||||||||||  |||| ||| |||||||||||||||| |||||||||||    
T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc 14715372  T

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