View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18105_low_2 (Length: 759)

Name: NF18105_low_2
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18105_low_2
NF18105_low_2
[»] chr3 (2 HSPs)
chr3 (10-744)||(992729-993486)
chr3 (647-733)||(19613697-19613783)
[»] chr7 (3 HSPs)
chr7 (158-732)||(21926744-21927338)
chr7 (392-653)||(6012915-6013177)
chr7 (178-316)||(6013248-6013386)
[»] scaffold0371 (1 HSPs)
scaffold0371 (158-617)||(12474-12937)
[»] chr4 (4 HSPs)
chr4 (208-540)||(17397344-17397680)
chr4 (597-679)||(18207761-18207843)
chr4 (218-292)||(9252463-9252537)
chr4 (579-645)||(17397986-17398053)
[»] scaffold1200 (1 HSPs)
scaffold1200 (194-691)||(574-1059)
[»] scaffold0323 (1 HSPs)
scaffold0323 (597-743)||(18209-18360)
[»] chr6 (6 HSPs)
chr6 (556-696)||(12874652-12874793)
chr6 (682-744)||(12874241-12874303)
chr6 (556-616)||(21803874-21803935)
chr6 (703-744)||(21803962-21804003)
chr6 (163-262)||(22585889-22585988)
chr6 (163-262)||(22590720-22590819)
[»] chr5 (3 HSPs)
chr5 (394-535)||(23279750-23279897)
chr5 (165-337)||(20250746-20250916)
chr5 (646-729)||(23279563-23279647)
[»] chr2 (2 HSPs)
chr2 (163-264)||(67603-67704)
chr2 (218-292)||(23281568-23281642)
[»] chr8 (2 HSPs)
chr8 (667-738)||(21490103-21490176)
chr8 (179-264)||(12518149-12518234)
[»] scaffold0396 (1 HSPs)
scaffold0396 (163-264)||(12218-12319)
[»] scaffold0959 (1 HSPs)
scaffold0959 (218-292)||(1569-1643)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 10 - 744
Target Start/End: Original strand, 992729 - 993486
Alignment:
Q  10 catcatcaaaagaacaactaggaacatgcaaaacccacccccatgttgtcttgggcgcccatcgccaggatgtgccagtctaaacgttggctctctgtac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  992729 catcatcaaaagaacaactaggaacatgcaaaacccacccccatgttgtcttgggcgcccatcaccaggatgtgcaagtctaaacgttggctctctgtac 992828  T
Q  110 tc----------------------agcgccagcacagcgaagaaatcgaaaatgtgtgtttggacctcgaattctcttcaaaatcaaccaaaaagtgctt 187  Q
    ||                      ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  992829 tcggacgcctagtgctcttgttgcagcgccagcacagcgaagaaatcgaaaatgtgtgttttggcctcgaattctcttcaaaatcaaccaaaaagtgctt 992928  T
Q  188 atttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagcttatactt 287  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  992929 atttagatcctccatacacccaaagtgtttaaaatcattttccaaggctcaaacacatcatttaaactcttttcacaactacataaaacagcttatactt 993028  T
Q  288 caattaacatagtttttcacttaattcatcaaaatctcaacaacaacaacaacttaaaacaatcaagcatagctttagacatagtcaacaacataatt-c 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  993029 caattaacatagtttttcacttaattcatcaaaatctcaacaacaacaacaacttaaaacaatcaagcatagctttagacatagtcaacatcataatttc 993128  T
Q  387 caccactttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatcaacaactccaagaattctatgcaattaagctaaaaac 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  993129 caccactttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatccacaactccaagaattctatgcaattaagctaaaaac 993228  T
Q  487 aatccaacttaacataatcaaacatagattctcatgcagcaacaacatgcttttccacttttgccgtattcaaaataaccatcatatttggagcacgaaa 586  Q
     ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  993229 tatccaacttaacataatcaaacatatattctcatgcagcagcaacatgcttttccacttttgccgtattcaaaataaccatcatatttggagcacaaaa 993328  T
Q  587 ttaacttcattcaacaacaaattcatgaaaacttaagaacacacatattccataaccactcaattgtttataagttctacatggtgaaaataactttccc 686  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  993329 ttaacttcattcaacaacaaattcatgataacttaagaacacacatattccataaccactcaattgtttataagttctagatggtgaaaataactttccc 993428  T
Q  687 tcttacctcttaatccaataagctagcttcctaagctttaatctacctcttctctttg 744  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  993429 tcttacctcttaatccaataagctagcttcctaagctttaatctacctcttctctttg 993486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 733
Target Start/End: Complemental strand, 19613783 - 19613697
Alignment:
Q  647 caattgtttataagttctacatggtgaaaataactttccctcttacctcttaatccaataagct-agcttcctaagctttaatctacc 733  Q
    |||||| | ||||| |||| |||||||||||||| ||||||||||||||| ||||||| ||||| ||| | |||||||| ||||||||    
T  19613783 caattgctcataagctctagatggtgaaaataaccttccctcttacctctcaatccaa-aagctaagcctgctaagcttcaatctacc 19613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 158 - 732
Target Start/End: Original strand, 21926744 - 21927338
Alignment:
Q  158 attctcttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactct 257  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||  | |||| | ||||||||||||| |||||||| ||||||||||||||| ||||    
T  21926744 attctcttcaaaatcaacccaaaaatgcttatttagatcccccatatgcccaaaatgtttaaaatcatttcccaaggctaaaacacatcatttaagctct 21926843  T
Q  258 tttcacagctatataaaacagcttatacttcaattaacatagtttttcacttaattcatca-aaatc------------tcaacaacaacaacaacttaa 344  Q
    ||||||| ||| | |||| ||||||||||||||||||||||||||||||||| |||| ||| || ||             ||||||||||||||||||||    
T  21926844 tttcacaactacacaaaagagcttatacttcaattaacatagtttttcacttgattcttcataagtcacaacaacaacaacaacaacaacaacaacttaa 21926943  T
Q  345 aacaatcaagcatagctttagacatagtcaacaacataattccaccactttcacatacccaatattatagcaagaagattgaacatagatttaatatcat 444  Q
     |||| ||| ||| |||||| || || ||||||| |||||||||| ||||||||| || |||||  ||||||||||||| ||||||| | || | |||||    
T  21926944 cacaaccaaacatggctttaaacgtaatcaacaatataattccactactttcacacactcaatagcatagcaagaagatagaacataaacttcacatcat 21927043  T
Q  445 tcatcaacaactccaagaattctatgcaattaagctaaaaac---aat---ccaacttaacataatcaaacatagattctcatgcagcaacaacatgctt 538  Q
    |||||||||| | || || |||||||||||||||||||||||   |||   |||||| | ||| ||||||| |||||||||||||| |||||| ||| ||    
T  21927044 tcatcaacaatttcatgatttctatgcaattaagctaaaaactcaaatacaccaactaatcatgatcaaacctagattctcatgcaacaacaatatgttt 21927143  T
Q  539 tt-ccacttttgccgtattcaaaataaccatcatatttggagcacgaaattaacttcattcaacaacaaattcatgaaaacttaagaacacacatattcc 637  Q
    || ||| ||||  | ||  |||||||  ||||||| |||||| ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||| |||    
T  21927144 ttaccatttttcacatacacaaaatattcatcataattggaggacgaaattaacttaattcaacaacgaattcatgaaaactcaagaaaacacataatcc 21927243  T
Q  638 ataaccactcaattgtttataagttctacatggtgaaaataactttccctcttacctcttaatccaataagct-agcttcctaagctttaatctac 732  Q
     ||||||| |||||| | | |||||||| |||||||||| ||| ||| ||||||||||||||||||| ||| | ||| |||||||||| |||||||    
T  21927244 ctaaccacacaattgctcacaagttctagatggtgaaaacaaccttctctcttacctcttaatccaa-aagttaagcctcctaagcttcaatctac 21927338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 653
Target Start/End: Complemental strand, 6013177 - 6012915
Alignment:
Q  392 ctttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatcaacaactccaagaattctatgcaattaagctaaaaac----- 486  Q
    |||||||||||||||| | |||| |||||||| |||||   |||||| ||||| ||||| ||||| || |||||  || |||||||||| |||||         
T  6013177 ctttcacatacccaatgtcatagtaagaagatagaacacgaatttaacatcatccatcatcaacttcatgaatttcattcaattaagcttaaaactcata 6013078  T
Q  487 aatccaacttaacataatcaaacatagattctcatgcagcaacaacatgcttttcca-cttttgccgtattcaaaataaccatcatatttggagcacgaa 585  Q
    |  | |||||| ||||||||||||| |||| ||||      |||||||| |||  || |||||  | |||  ||||||||||| ||  || |||||||||    
T  6013077 acactaacttatcataatcaaacatggattttcat------acaacatgttttcacaacttttcacatatgtaaaataaccataatgattagagcacgaa 6012984  T
Q  586 attaa-cttcattcaacaacaaattcatgaaaacttaagaacacacatattccataaccactcaattgt 653  Q
    ||||| ||| ||||| ||||||||||||||||   | |||||||||||| || ||||||||||||||||    
T  6012983 attaaacttaattcaccaacaaattcatgaaagtatgagaacacacataatctataaccactcaattgt 6012915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 6013386 - 6013248
Alignment:
Q  178 aaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataa-aac 276  Q
    |||||||||||||| ||||  |||||||||||||||  |||||||| |||  ||||  |||||||| | |||||| ||||||  ||| ||||  || |||    
T  6013386 aaaagtgcttattttgatcttccatacactcaaagtgcttaaaatcgtttctcaagattcaaacacttaatttaagctctttcgacaactatgcaacaac 6013287  T
Q  277 agcttatacttcaattaacatagtttttcacttaattcat 316  Q
    |  |||||||| ||||||||| | |||||||| |||||||    
T  6013286 attttatactttaattaacat-ggttttcactcaattcat 6013248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 158 - 617
Target Start/End: Original strand, 12474 - 12937
Alignment:
Q  158 attctcttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactct 257  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||||||| |||||| |||||||| |||||||||||| ||| |||||||||||| ||||    
T  12474 attctcatcaaaatcaaccaaaaagtacttatttagatctgccatacacccaaagtgtttaaaattattttccaaggcacaagcacatcatttaagctct 12573  T
Q  258 tttcacagctatataaaacagcttatacttcaattaacatagtttttcacttaattcatcaaaatctcaacaacaacaacaacttaaaacaatcaagcat 357  Q
    ||||| | ||||| |||||| |||| || |||||| ||||||||||| ||||||||||| ||||  ||  ||||||||| ||||||| |||| |||  ||    
T  12574 tttcataactatacaaaacatcttaaacctcaattcacatagttttt-acttaattcataaaaaagtc-tcaacaacaaaaacttaacacaagcaaatat 12671  T
Q  358 agctttagacatagtcaa-caacataattccaccactttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatcaacaact 456  Q
     |  ||||||||| |||| |||||||| ||||| |||||||| ||| |||||  ||| |||||||||||||||||| || || || ||||||||||||||    
T  12672 -gacttagacataatcaatcaacataagtccactactttcacttactcaataacataacaagaagattgaacatagtttcaacataattcatcaacaact 12770  T
Q  457 ccaagaattctatgcaattaagctaaaaac---aat---ccaacttaacataatcaaacatagattctcatgcagcaacaacatgctttt-ccacttttg 549  Q
     || | |||||| | |||||||| ||||||   |||   ||||||||  || |||||||||||||||||||||| ||||||||   |||| ||||||||     
T  12771 tcatgcattctacgaaattaagcgaaaaactcaaatacaccaacttattatcatcaaacatagattctcatgcaacaacaacacatttttaccacttttc 12870  T
Q  550 ccgtattcaaaataaccatcatatttggagcac-gaaattaacttcattcaacaacaaattcatgaaaa 617  Q
     | ||| |||||||| ||||||| ||  | |||  |||||||||| |||||||||||| ||||||||||    
T  12871 acatatccaaaataagcatcataatt--aacacataaattaacttaattcaacaacaatttcatgaaaa 12937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 208 - 540
Target Start/End: Original strand, 17397344 - 17397680
Alignment:
Q  208 caaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagctta---tacttcaattaacatagttttt 304  Q
    |||||| ||| ||||||||| ||||||||||||||||||| |||| ||||||||||| ||| | |||| | | ||   |||||||||||||| || ||||    
T  17397344 caaagtgttttaaatcatttcccaaggctcaaacacatcacttaatctcttttcacaactacacaaaataacatatactacttcaattaacaaag-tttt 17397442  T
Q  305 cacttaattcatcaaaatctcaacaacaacaacaacttaaaacaatcaagcatagctttagacatagtcaacaacataattccaccactttcacataccc 404  Q
    ||||||||||||||||| ||   ||||||||||||||||| ||||  || ||||||||| || ||| ||||||||||||||||| ||||||||||||||     
T  17397443 cacttaattcatcaaaacct---caacaacaacaacttaacacaaataaacatagcttttgaaataatcaacaacataattccatcactttcacataccg 17397539  T
Q  405 aatattatagcaagaagattgaacatagatttaatatcattcatcaacaactccaagaattctatgcaattaagctaaaa-----acaatccaacttaac 499  Q
    ||||| ||||||||||||||||| ||| |||||| |||| |||||||||||| || || ||  |  ||||||| ||||||     | |  |||||| | |    
T  17397540 aatatcatagcaagaagattgaatataaatttaacatcaatcatcaacaacttcatgattttcacacaattaaactaaaacgcataaacaccaactcatc 17397639  T
Q  500 ataatcaaacatagattctcatgcagcaacaacatgctttt 540  Q
    |||||||||||||||||| |||||| |||||||||| ||||    
T  17397640 ataatcaaacatagattcccatgcatcaacaacatgttttt 17397680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 597 - 679
Target Start/End: Original strand, 18207761 - 18207843
Alignment:
Q  597 tcaacaacaaattcatgaaaacttaagaacacacatattccataaccactcaattgtttataagttctacatggtgaaaataa 679  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||| |||||||||| |||  ||||||||    
T  18207761 tcaacaacaaattcatgaaaacttaagaacacacataatccacaaccgcacaattgttcataagttctagatgtcgaaaataa 18207843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 9252463 - 9252537
Alignment:
Q  218 aaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagcttatacttcaatt 292  Q
    ||||||||||||||||| ||||| ||| |||||| |||||||||||  | ||| |||||| ||||||||||||||    
T  9252463 aaaatcattttccaaggttcaaatacaccatttagactcttttcacgacaatacaaaacaacttatacttcaatt 9252537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 17397986 - 17398053
Alignment:
Q  579 gcacgaaattaacttcattcaacaa-caaattcatgaaaacttaagaacacacatattccataaccac 645  Q
    |||| |||||||||| |||| |||| ||||||||||||||||||||| |||||||| |||| ||||||    
T  17397986 gcacaaaattaacttaattccacaatcaaattcatgaaaacttaagagcacacataatccacaaccac 17398053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1200 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold1200
Description:

Target: scaffold1200; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 194 - 691
Target Start/End: Complemental strand, 1059 - 574
Alignment:
Q  194 atcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagcttatacttcaatta 293  Q
    |||||| ||| || |||||| |||||||||||| |||| || |||||||| ||| |||| |||||| |||| || || | | || |||| ||||||| ||    
T  1059 atccccaatatacccaaagtgtttaaaatcattctccacggttcaaacacttcacttaagctctttccacaactttagacatcaacttaaacttcaacta 960  T
Q  294 acatagtttttcacttaattcatcaaaa-tctcaacaacaacaacaacttaaaacaatcaagcatagctttagacatagtcaacaacataattccaccac 392  Q
    |||| ||||| |||| ||||||||| || |||||| |||||||||   |||| | |||||| ||||| |||  || || ||||||| || ||||||| ||    
T  959 acatggtttt-cactcaattcatcataagtctcaaaaacaacaac---ttaacataatcaaacatagattttcacgtactcaacaagatgattccactac 864  T
Q  393 tttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatcaacaactccaagaattctatgcaattaagctaaaaac------ 486  Q
    ||||||||||| ||| | ||||||| |||||  |||||  |||||| ||||  ||||||||| | || |||||  || ||||||||||||||||          
T  863 tttcacataccgaatgtcatagcaataagatataacatcaatttaacatcac-catcaacaaattcatgaatttcattcaattaagctaaaaacttataa 765  T
Q  487 aatccaacttaacataatcaaacatagattctcatgcagcaacaacatgcttttc-cacttttgccgtattcaaaataaccatcatatttggagcacgaa 585  Q
    || |||||||| ||||||||||||| |||||||||||| ||||||||  |||||| ||  |||       |||       ||| ||| ||||||||||||    
T  764 aaaccaacttatcataatcaaacatggattctcatgcatcaacaacaa-cttttcacaacttt-------tca-------cataataattggagcacgaa 680  T
Q  586 attaacttcattcaacaacaaattcatgaaaacttaagaacacacatattccataaccactcaattgtttataagttctacatggtgaaaataactttcc 685  Q
    |||||||| ||||||||| |||||||| |||||||||  ||||||||| |||||||||||||||||||| | |||||||| |||||||||||||| || |    
T  679 attaacttaattcaacaataaattcataaaaacttaaacacacacataatccataaccactcaattgttcacaagttctagatggtgaaaataaccttac 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 597 - 743
Target Start/End: Complemental strand, 18360 - 18209
Alignment:
Q  597 tcaacaacaaattcatgaaaacttaagaacacacatattccataaccactcaattgtttataagttctacatggtgaaaataactttccct----cttac 692  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||| |||||||||| |||  ||||||||  ||||||    | |||    
T  18360 tcaacaacaaattcatgaaaacttaagaacacacataatccacaaccgcacaattgttcataagttctagatgtcgaaaataatcttcccttttacgtac 18261  T
Q  693 ctcttaatccaa-taagctagcttcctaagctttaatctacctcttctcttt 743  Q
    |||||||||||| |||| |||| |||||||||| |||||| |||||| ||||    
T  18260 ctcttaatccaattaagttagcctcctaagcttcaatctaactcttcacttt 18209  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 556 - 696
Target Start/End: Complemental strand, 12874793 - 12874652
Alignment:
Q  556 tcaaaataaccatcatatttggagcacgaaattaacttcattcaacaacaaa-ttcatgaaaacttaagaacacacatattccataaccactcaattgtt 654  Q
    ||||||||| ||| ||| || | ||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| |||| ||    
T  12874793 tcaaaataatcataataattagggcacgaaattaacttaattcaacaaaaaaattcatgaaaacttaagaacacgcataatctacaaccacttaattttt 12874694  T
Q  655 tataagttctacatggtgaaaataactttccctcttacctct 696  Q
     |||| ||||| || ||||||||||  |||||||||||||||    
T  12874693 cataaattctagattgtgaaaataatcttccctcttacctct 12874652  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 12874303 - 12874241
Alignment:
Q  682 ttccctcttacctcttaatccaataagctagcttcctaagctttaatctacctcttctctttg 744  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  12874303 ttccctcttacctcttaatccaataagctagccacctatgctttaatctacctcttctctttg 12874241  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 616
Target Start/End: Original strand, 21803874 - 21803935
Alignment:
Q  556 tcaaaataaccatcatatttggagcacgaaatt-aacttcattcaacaacaaattcatgaaa 616  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  21803874 tcaaaataaccacaataattggagcacgaaattaaacttaatttaacaacaaattcatgaaa 21803935  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 744
Target Start/End: Original strand, 21803962 - 21804003
Alignment:
Q  703 aataagctagcttcctaagctttaatctacctcttctctttg 744  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  21803962 aataagctagcctcataagctttaatctacctcttctctttg 21804003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 22585988 - 22585889
Alignment:
Q  163 cttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttca 262  Q
    |||| |||||| || |||||||||||||| ||| |||||| ||| |||||| ||||| | | | | |||||||| ||||||||||  ||| |||||||||    
T  22585988 cttctaaatcaccccaaaagtgcttattttgattccccattcacccaaagtgtttaacaacttatcccaaggcttaaacacatcaaataagctcttttca 22585889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 22590819 - 22590720
Alignment:
Q  163 cttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttca 262  Q
    |||| |||||| || |||||||||||||| ||| |||||| ||| |||||| ||||| | | | | |||||||| ||||||||||  ||| |||||||||    
T  22590819 cttctaaatcaccccaaaagtgcttattttgattccccattcacccaaagtgtttaacaacttatcccaaggcttaaacacatcaaataagctcttttca 22590720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 394 - 535
Target Start/End: Complemental strand, 23279897 - 23279750
Alignment:
Q  394 ttcacatacccaatattatagcaagaagattgaacatagatttaatatcattcatcaacaactccaagaattctatgcaattaagctaaa-----aacaa 488  Q
    |||||||||||||||| ||||||||||||| ||||||  ||||||||| |||| ||||||||| || |||||  || |||||||||||||     || ||    
T  23279897 ttcacatacccaatatcatagcaagaagatagaacatgaatttaatattattcgtcaacaacttcatgaatttcattcaattaagctaaagactcaaaaa 23279798  T
Q  489 t-ccaacttaacataatcaaacatagattctcatgcagcaacaacatg 535  Q
    | |||||||| ||||||||||||  |||||||||||| ||||||||||    
T  23279797 taccaacttatcataatcaaacacggattctcatgcatcaacaacatg 23279750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 337
Target Start/End: Complemental strand, 20250916 - 20250746
Alignment:
Q  165 tcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcaca 264  Q
    ||||||||| |  ||||||||||||||||||| | ||| ||  |||| | |||||||||||||||  ||||||||||||| || | || ||| |||||||    
T  20250916 tcaaaatcacctcaaaagtgcttatttagatctctcattcatccaaaatgtttaaaatcattttctgaggctcaaacacaccaataaagctcatttcaca 20250817  T
Q  265 gctatataaaacagcttatacttcaattaacatagtttttcacttaattcatcaaaatctcaacaacaacaac 337  Q
     | | | |||||| ||||| | |||||| |||||| |||||||||||||||||||| |  |||||||||||||    
T  20250816 ac-acacaaaacaacttatgcatcaattcacatag-ttttcacttaattcatcaaagttccaacaacaacaac 20250746  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 729
Target Start/End: Complemental strand, 23279647 - 23279563
Alignment:
Q  646 tcaattgtttataagttctacatggtgaaaataactttccctcttacctcttaatccaataagctagcttc--ctaagctttaatc 729  Q
    |||||| || |||||||||| |||||||||||| |||    ||||||||| ||||||||||||||||| ||  |||||||||||||    
T  23279647 tcaattattcataagttctagatggtgaaaataccttgtt-tcttacctcataatccaataagctagcctcctctaagctttaatc 23279563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 67603 - 67704
Alignment:
Q  163 cttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttca 262  Q
    ||||||||||| || |||||||||||||| ||| |||||| ||| |||||| ||||| | | | | |||||||||||||||||||  ||| |||||||||    
T  67603 cttcaaaatcaccccaaaagtgcttattttgattccccattcacccaaagtgtttaacaacttatcccaaggctcaaacacatcaaataagctcttttca 67702  T
Q  263 ca 264  Q
    ||    
T  67703 ca 67704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 23281568 - 23281642
Alignment:
Q  218 aaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagcttatacttcaatt 292  Q
    ||||||||||| ||||| ||||| |||| ||||| |||||||||||| | | | |||||| ||||||||||||||    
T  23281568 aaaatcatttttcaaggttcaaatacattatttagactcttttcacaacaacacaaaacaacttatacttcaatt 23281642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 738
Target Start/End: Complemental strand, 21490176 - 21490103
Alignment:
Q  667 atggtgaaaataactttccctcttacctcttaatccaataagctagcttcct--aagctttaatctacctcttc 738  Q
    |||||||||||||  | ||| |||||||||||||||||||||||||| ||||  ||||||||| || |||||||    
T  21490176 atggtgaaaataatctccccccttacctcttaatccaataagctagcctcctacaagctttaacctccctcttc 21490103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 12518149 - 12518234
Alignment:
Q  179 aaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttcaca 264  Q
    ||||||||||||| |||||||||| ||| ||||||  ||||||   | | |||||||||||||||||||  ||| |||||||||||    
T  12518149 aaagtgcttattttgatcccccattcacccaaagtgattaaaaggttgtcccaaggctcaaacacatcaaataagctcttttcaca 12518234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 12319 - 12218
Alignment:
Q  163 cttcaaaatcaaccaaaaagtgcttatttagatcccccatacactcaaagtatttaaaatcattttccaaggctcaaacacatcatttaaactcttttca 262  Q
    ||||||||||| || |||||||||||||| ||| | |||| ||| |||||| ||||| | | | | || ||||||||||||||||  ||| |||||||||    
T  12319 cttcaaaatcaccccaaaagtgcttattttgattctccattcacccaaagtgtttaacaacttatcccgaggctcaaacacatcaaataagctcttttca 12220  T
Q  263 ca 264  Q
    ||    
T  12219 ca 12218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 1569 - 1643
Alignment:
Q  218 aaaatcattttccaaggctcaaacacatcatttaaactcttttcacagctatataaaacagcttatacttcaatt 292  Q
    ||||||| ||||||||| ||||| ||| |||||| |||||||| ||  | ||| |||||| ||||||||||||||    
T  1569 aaaatcaatttccaaggttcaaatacaccatttagactctttttacgacaatacaaaacaacttatacttcaatt 1643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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